freshwater metagenome (ID 636190) - BioProject

Display Settings:

Format

Summary
BioProject ID list
Accessions List

Send to:

Choose Destination

File
Clipboard
Collections
My Bibliography

Accession: PRJNA636190 ID: 636190

freshwater metagenome

Shotgun metagenome sequences collected from each five Laurentian Great Lakes collected during the US EPA Great Lakes National Program Office Spring and Summer Surveys aboard the R/V Lake Guardian

Accession	PRJNA636190
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	freshwater metagenome[Taxonomy ID: 449393] unclassified sequences; metagenomes; ecological metagenomes; freshwater metagenome
Submission	Registration date: 21-Jul-2020 University of Chicago
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	30
SRA Experiments	6
Other datasets
BioSample	782
Assembly	30

Assembly details:

Download

Assembly level

Number of Assemblies

Contig

Total

30
30

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_016106565.1	JADMAF000000000	SAMN16622487	MC6_S4_M_CONCOCT_147	Candidatus Nitrotoga sp.
GCA_016106585.1	JADMAD000000000	SAMN16622483	MC14_S12_M_Binsanity_031	Candidatus Nitrotoga sp.
GCA_016106575.1	JADMAE000000000	SAMN16622486	MC12_S10_M_MetaBAT2_036	Candidatus Nitrotoga sp.
GCA_016106535.1	JADMAC000000000	SAMN16622482	ON33M_5M_MetaBAT2_032	Candidatus Nitrotoga sp.
GCA_013521075.1	JACDOQ000000000	SAMN15216877	MC9_S7_M_CONCOCT_170	Candidatus Nitrotoga sp.
GCA_013521105.1	JACDOR000000000	SAMN15217022	MC4_S2_Binsanity_014	Candidatus Nitrotoga sp.
GCA_016106185.1	JADLZV000000000	SAMN16622387	ON33M_5M_MeaBAT2_044	Nitrosarchaeum sp.
GCA_016106165.1	JADLZW000000000	SAMN16622388	SU08M_6M_MetaBAT2_048	Nitrosarchaeum sp.
GCA_013521055.1	JACDOP000000000	SAMN15216785	MC17_S15_bin_49	Nitrosarchaeum sp.
GCA_016106425.1	JADMAG000000000	SAMN16622463	MC4_S2_CONCOCT_122	Nitrosospira sp.
GCA_016106405.1	JADMAR000000000	SAMN16622462	MC9_S7_M_Binsanity_092	Nitrosospira sp.
GCA_016106375.1	JADMAP000000000	SAMN16622448	MC12_S10_M_MetaBAT2_028	Nitrosospira sp.
GCA_016106365.1	JADMAQ000000000	SAMN16622449	MC17_S15_bin_58	Nitrosospira sp.
GCA_016106335.1	JADMAN000000000	SAMN16622403	ON33M_5M_MetaBAT2_013	Nitrosospira sp.
GCA_016106315.1	JADMAM000000000	SAMN16622402	MC14_S12_M_CONCOCT_096	Nitrosospira sp.
GCA_016106295.1	JADMAO000000000	SAMN16622447	MI27M_4M_MetaBAT2_005	Nitrosospira sp.
GCA_016106275.1	JADMAL000000000	SAMN16622401	MC12_S10_M_MetaBAT2_031	Nitrosospira sp.
GCA_016106265.1	JADMAK000000000	SAMN16622400	SU08M_6M_MetaBAT2_044	Nitrosospira sp.
GCA_016106225.1	JADMAH000000000	SAMN16622389	MI27M_4M_MetaBAT2_020	Nitrosospira sp.
GCA_016106235.1	JADMAI000000000	SAMN16622398	MC9_S7_M_Binsanity_197	Nitrosospira sp.
GCA_016106175.1	JADMAJ000000000	SAMN16622399	ON33M_5M_Binsanity_121	Nitrosospira sp.
GCA_013450215.1	JACDSH000000000	SAMN15216671	MC14_S12_M_CONCOCT_099	Nitrosospira sp.
GCA_013521015.1	JACDON000000000	SAMN15216700	SU08M_6M_CONCOCT_073	Nitrosospira sp.
GCA_013520955.1	JACDOM000000000	SAMN15068373	MC17_S15_bin_110	Nitrosospira sp.
GCA_016106515.1	JADMAB000000000	SAMN16622469	SU08M_6M_Binsanity_100	Nitrospira sp.
GCA_016106505.1	JADMAA000000000	SAMN16622468	MC17_S15_bin_99	Nitrospira sp.
GCA_016106475.1	JADLZZ000000000	SAMN16622467	ON33M_5M_Binsanity_131	Nitrospira sp.
GCA_016106465.1	JADLZY000000000	SAMN16622466	MC12_S10_M_CONCOCT_025	Nitrospira sp.
GCA_016106435.1	JADLZX000000000	SAMN16622465	MC9_S7_M_Binsanity_088	Nitrospira sp.
GCA_013521025.1	JACDOO000000000	SAMN15216727	MC14_S12_M_CONCOCT_129	Nitrospira sp.

SRA Data Details

Parameter	Value
Data volume, Gbases	77
Data volume, Mbytes	38543

BioProject

Result Filters

Display Settings:

Send to:

freshwater metagenome

Supplemental Content

Related information

Recent activity