See
Genome Information for Staphylococcus aureus
We developed a novel algorithm, smORFer, detecting smORFs (e.g. <50 codons) which performs with higher accuracy in prokaryotic organisms. smORFer considers structural features of genetic sequence along with in-register translation and using Fourier transform converts them into a measurable score to faithfully select smORFs. The algorithm is executed in a modular way and dependent on the data available different modules can be tested.
Overall design: Ribosome profiling of Staphylococcus aureus cultured in complex TBS medium
| Accession | PRJNA632889; GEO: GSE150601 |
| Data Type | Transcriptome or Gene expression |
| Scope | Multiisolate |
| Organism | Staphylococcus aureus[Taxonomy ID: 1280] Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; Staphylococcus aureus |
| Publications | Bartholomäus A et al., "smORFer: a modular algorithm to detect small ORFs in prokaryotes.", Nucleic Acids Res, 2021 Sep 7;49(15):e89 |
| Submission | Registration date: 14-May-2020
Universitaet Hamburg |
| Relevance | Medical |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 2 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 2 |
| GEO DataSets | 1 |