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Accession: PRJNA593695 ID: 593695

Escherichia coli

Escherichia coli Raw sequence reads

See Genome Information for Escherichia coli
MCR-1-producing E. coli isolates
AccessionPRJNA593695
Data TypeRaw sequence reads
ScopeMultiisolate
OrganismEscherichia coli[Taxonomy ID: 562]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Publications
  • Shen C et al., "Genomic patterns and characterizations of chromosomally-encoded mcr-1 in Escherichia coli populations.", Gut Pathog, 2020 Nov 28;12(1):55
  • Published online: Shen C et al., "Dynamics of mcr-1 prevalence and mcr-1-positive Escherichia coli after the cessation of colistin use as a feed additive for animals in China: a prospective cross-sectional and whole genome sequencing-based molecular epidemiological study", The Lancet Microbe, 2020;1(1)
Grants
  • "2. The research of transmission, evolution and exploration of inhibitors for new plasmid mediated colistin resistance mechanism MCR-1" (Grant ID 81830103, National Natural Science Foundation of China)
  • "1. The research of transmission mechanism for colistin resistance gene MCR-1 among different hosts" (Grant ID 19ykyj557, Innovative development program for outstanding graduate students of Sun Yat-sen University)
SubmissionRegistration date: 5-Dec-2019
Sun Yat-sen University
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments688
Publications
PubMed1
PMC1
Other datasets
BioSample688
SRA Data Details
ParameterValue
Data volume, Gbases1,016
Data volume, Tbytes0.33

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