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Accession: PRJNA563888 ID: 563888

Pantoea

Genomic diversity of phyloplane-associated Pantoea species in Pakistan cotton crop

Bacterial leaf blight (BLB) of cotton is an important bacterial disease occurring in all cotton producing countries of the world, including Pakistan. More...
AccessionPRJNA563888
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismPantoea[Taxonomy ID: 53335]
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Pantoea
SubmissionRegistration date: 21-Sep-2019
Cook Lab - University of California at Davis
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)2144
WGS master43
SRA Experiments43
Protein Sequences190079
Other datasets
BioSample43
Assembly43
Assembly details:
Assembly levelNumber of Assemblies
32
11
43
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_008632105.1ScaffoldVWVO00000000SAMN12692234
B_10
GCA_008632095.1ScaffoldVWVN00000000SAMN12692235
B_2
GCA_008632075.1ContigVWVM00000000SAMN12692236
B_8
GCA_008632015.1ScaffoldVWVL00000000SAMN12692237
B_9
GCA_008632025.1ContigVWVK00000000SAMN12692238
Bo_10
GCA_008632005.1ScaffoldVWVJ00000000SAMN12692239
Bo_11
GCA_008631995.1ScaffoldVWVI00000000SAMN12692240
Bo_13
GCA_008631975.1ScaffoldVWVH00000000SAMN12692241
Bo_14
GCA_008631935.1ScaffoldVWVG00000000SAMN12692242
Bo_19
GCA_008631925.1ScaffoldVWVF00000000SAMN12692243
Bo_2
GCA_008631905.1ScaffoldVWVE00000000SAMN12692244
Bo_21
GCA_008631895.1ScaffoldVWVD00000000SAMN12692245
Bo_3
GCA_008631865.1ScaffoldVWVC00000000SAMN12692246
Bo_34a
GCA_008631835.1ScaffoldVWVB00000000SAMN12692247
Bo_39
GCA_008631825.1ScaffoldVWVA00000000SAMN12692248
Bo_40
GCA_008631815.1ScaffoldVWUZ00000000SAMN12692249
Bo_46
GCA_008631795.1ScaffoldVWUY00000000SAMN12692250
Bo_5
GCA_008631755.1ContigVWUX00000000SAMN12692251
Bo_7
GCA_008631735.1ScaffoldVWUW00000000SAMN12692252
FN_2b
GCA_008631725.1ContigVWUV00000000SAMN12692253
F_11
GCA_008631715.1ContigVWUU00000000SAMN12692254
F_12
GCA_008631685.1ScaffoldVWUT00000000SAMN12692255
F_14
GCA_008631665.1ScaffoldVWUS00000000SAMN12692256
F_15
GCA_008631645.1ScaffoldVWUR00000000SAMN12692257
F_16
GCA_008631635.1ContigVWUQ00000000SAMN12692258
F_17
GCA_008631615.1ScaffoldVWUP00000000SAMN12692259
F_18
GCA_008631595.1ScaffoldVWUO00000000SAMN12692260
F_5
GCA_008631565.1ScaffoldVWUN00000000SAMN12692261
F_7
GCA_008631555.1ScaffoldVWUM00000000SAMN12692262
M_1
GCA_008631515.1ScaffoldVWUL00000000SAMN12692263
M_10
GCA_008631505.1ScaffoldVWUK00000000SAMN12692264
M_3
GCA_008631475.1ScaffoldVWUJ00000000SAMN12692265
M_4
GCA_008631495.1ContigVWUI00000000SAMN12692266
M_5
GCA_008631445.1ContigVWUH00000000SAMN12692267
M_6
GCA_008631425.1ScaffoldVWUG00000000SAMN12692268
M_8
GCA_008631385.1ScaffoldVWUF00000000SAMN12692269
M_9
GCA_008631415.1ScaffoldVWUE00000000SAMN12692270
VH_16
GCA_008631375.1ScaffoldVWUD00000000SAMN12692271
VH_18
GCA_008631345.1ContigVWUC00000000SAMN12692272
VH_24
GCA_008631335.1ScaffoldVWUB00000000SAMN12692273
VH_25
GCA_008631285.1ContigVWUA00000000SAMN12692274
VH_3
GCA_008631295.1ScaffoldVWTZ00000000SAMN12692275
VH_4
GCA_008631275.1ContigVWTY00000000SAMN12692276
VH_8
SRA Data Details
ParameterValue
Data volume, Gbases49
Data volume, Mbytes19989

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    Genomic diversity of phyloplane-associated Pantoea species in Pakistan cotton crop
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