U.S. flag

An official website of the United States government

Display Settings:

Format

Send to:

Choose Destination
Accession: PRJNA482655 ID: 482655

marine metagenome

ALOHA Deep Trap Sequencing

Environmental genomic and transcriptomic sequences from microbial communities and eukaryotic biomass associated with sinking particles collected at abyssal depths (4000 m) in the North Pacific Subtropical Gyre.
AccessionPRJNA482655
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismmarine metagenome[Taxonomy ID: 408172]
unclassified sequences; metagenomes; ecological metagenomes; marine metagenome
SubmissionRegistration date: 2-Apr-2019
Simons Collaboration on Ocean Processes and Ecology (SCOPE)
- University of Hawaii
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)2796
WGS master153
SRA Experiments144
Other datasets
BioSample216
Assembly153
Assembly details:
Assembly levelNumber of Assemblies
117
36
153
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_013216125.1ScaffoldJABSOF000000000SAMN14675689
DT_1
GCA_013216025.1ScaffoldJABSOG000000000SAMN14675690
DT_2
GCA_013216065.1ScaffoldJABSOH000000000SAMN14675691
DT_3
GCA_013215815.1ScaffoldJABSQP000000000SAMN14675751
DT_63
GCA_013216015.1ScaffoldJABSOI000000000SAMN14675692
DT_4
GCA_013216005.1ScaffoldJABSOJ000000000SAMN14675693
DT_5
GCA_004566185.1ContigSPLE00000000SAMN11163851
CSH_ALOHA_XIX_Bin_4
GCA_013216085.1ScaffoldJABSOK000000000SAMN14675694
DT_6
GCA_004566295.1ContigSPLA00000000SAMN11163847
CSH_ALOHA_XIX_Bin_5
GCA_022969275.1ContigJALJOX000000000SAMN25998893
ALOHA_DT_122
GCA_013216185.1ScaffoldJABSOP000000000SAMN14675699
DT_11
GCA_013216195.1ScaffoldJABSOQ000000000SAMN14675700
DT_12
GCA_013216165.1ScaffoldJABSOO000000000SAMN14675698
DT_10
GCA_013215985.1ScaffoldJABSOL000000000SAMN14675695
DT_7
GCA_013215945.1ContigJABSOM000000000SAMN14675696
DT_8
GCA_013215915.1ScaffoldJABSON000000000SAMN14675697
DT_9
GCA_022969255.1ScaffoldJALJOY000000000SAMN25998894
ALOHA_DT_123
GCA_013216135.1ScaffoldJABSOS000000000SAMN14675702
DT_14
GCA_013213985.1ContigJABSSP000000000SAMN14675803
DT_115
GCA_013215865.1ContigJABSQL000000000SAMN14675747
DT_59
GCA_013215365.1ContigJABSRC000000000SAMN14675764
DT_76
GCA_013214115.1ContigJABSSO000000000SAMN14675802
DT_114
GCA_022969235.1ScaffoldJALJOZ000000000SAMN25998895
ALOHA_DT_124
GCA_013215575.1ContigJABSOT000000000SAMN14675703
DT_15
GCA_013215215.1ScaffoldJABSOU000000000SAMN14675704
DT_16
GCA_022969215.1ScaffoldJALJPA000000000SAMN25998896
ALOHA_DT_125
GCA_022969175.1ScaffoldJALJPB000000000SAMN25998897
ALOHA_DT_126
GCA_013215385.1ScaffoldJABSOY000000000SAMN14675708
DT_20
GCA_013215295.1ScaffoldJABSOZ000000000SAMN14675709
DT_21
GCA_013215655.1ScaffoldJABSOX000000000SAMN14675707
DT_19
GCA_013215345.1ScaffoldJABSOV000000000SAMN14675705
DT_17
GCA_013215465.1ScaffoldJABSOW000000000SAMN14675706
DT_18
GCA_013214175.1ScaffoldJABSPA000000000SAMN14675710
DT_22
GCA_013215645.1ScaffoldJABSPB000000000SAMN14675711
DT_23
GCA_013215515.1ContigJABSPC000000000SAMN14675712
DT_24
GCA_013214785.1ScaffoldJABSPD000000000SAMN14675713
DT_25
GCA_013215395.1ScaffoldJABSPE000000000SAMN14675714
DT_26
GCA_013216095.1ScaffoldJABSOR000000000SAMN14675701
DT_13
GCA_013215265.1ScaffoldJABSPF000000000SAMN14675715
DT_27
GCA_013214445.1ScaffoldJABSPG000000000SAMN14675716
DT_28
GCA_022969155.1ScaffoldJALJPC000000000SAMN25998898
ALOHA_DT_127
GCA_013215045.1ScaffoldJABSPH000000000SAMN14675717
DT_29
GCA_004566195.1ContigSPLJ00000000SAMN11163856
CSH_ALOHA_XIX_Bin_11
GCA_004566155.1ContigSPLI00000000SAMN11163855
CSH_ALOHA_XIX_Bin_9
GCA_013214865.1ScaffoldJABSPJ000000000SAMN14675719
DT_31
GCA_013214365.1ScaffoldJABSPI000000000SAMN14675718
DT_30
GCA_013214625.1ScaffoldJABSPO000000000SAMN14675724
DT_36
GCA_013214425.1ScaffoldJABSPN000000000SAMN14675723
DT_35
GCA_013214275.1ScaffoldJABSPP000000000SAMN14675725
DT_37
GCA_013214065.1ScaffoldJABSPK000000000SAMN14675720
DT_32
GCA_013215105.1ContigJABSPL000000000SAMN14675721
DT_33
GCA_013215095.1ContigJABSPM000000000SAMN14675722
DT_34
GCA_004566235.1ContigSPLG00000000SAMN11163853
CSH_ALOHA_XIX_Bin_7
GCA_022969195.1ScaffoldJALJPD000000000SAMN25998899
ALOHA_DT_128
GCA_013214975.1ContigJABSPR000000000SAMN14675727
DT_39
GCA_013214915.1ScaffoldJABSPT000000000SAMN14675729
DT_41
GCA_013214405.1ScaffoldJABSPS000000000SAMN14675728
DT_40
GCA_013214205.1ScaffoldJABSPQ000000000SAMN14675726
DT_38
GCA_013214885.1ScaffoldJABSRS000000000SAMN14675780
DT_92
GCA_013214965.1ScaffoldJABSRU000000000SAMN14675782
DT_94
GCA_013214945.1ScaffoldJABSRT000000000SAMN14675781
DT_93
GCA_004566165.1ContigSPLF00000000SAMN11163852
CSH_ALOHA_XIX_Bin_6
GCA_004566305.1ContigSPLC00000000SAMN11163849
CSH_ALOHA_XIX_Bin_1
GCA_013214815.1ScaffoldJABSPU000000000SAMN14675730
DT_42
GCA_013214775.1ScaffoldJABSPV000000000SAMN14675731
DT_43
GCA_013214285.1ContigJABSPW000000000SAMN14675732
DT_44
GCA_022969075.1ScaffoldJALJPE000000000SAMN25998900
ALOHA_DT_129
GCA_013214215.1ContigJABSPY000000000SAMN14675734
DT_46
GCA_013213865.1ContigJABSPX000000000SAMN14675733
DT_45
GCA_013213825.1ScaffoldJABSQA000000000SAMN14675736
DT_48
GCA_013214545.1ScaffoldJABSQB000000000SAMN14675737
DT_49
GCA_013213785.1ScaffoldJABSPZ000000000SAMN14675735
DT_47
GCA_013214245.1ScaffoldJABSQE000000000SAMN14675740
DT_52
GCA_022968955.1ScaffoldJALJPN000000000SAMN25998909
ALOHA_DT_138
GCA_022968915.1ScaffoldJALJPO000000000SAMN25998910
ALOHA_DT_139
GCA_013214705.1ScaffoldJABSRZ000000000SAMN14675787
DT_99
GCA_013214985.1ScaffoldJABSRY000000000SAMN14675786
DT_98
GCA_022969125.1ScaffoldJALJPF000000000SAMN25998901
ALOHA_DT_130
GCA_013215085.1ScaffoldJABSQG000000000SAMN14675742
DT_54
GCA_013214125.1ContigJABSQF000000000SAMN14675741
DT_53
GCA_013213745.1ContigJABSQH000000000SAMN14675743
DT_55
GCA_013215905.1ScaffoldJABSQI000000000SAMN14675744
DT_56
GCA_013215935.1ScaffoldJABSQJ000000000SAMN14675745
DT_57
GCA_022969115.1ScaffoldJALJPG000000000SAMN25998902
ALOHA_DT_131
GCA_013215875.1ScaffoldJABSQK000000000SAMN14675746
DT_58
GCA_022969095.1ScaffoldJALJPH000000000SAMN25998903
ALOHA_DT_132
GCA_013215745.1ScaffoldJABSQQ000000000SAMN14675752
DT_64
GCA_013215705.1ScaffoldJABSQR000000000SAMN14675753
DT_65
GCA_013215765.1ScaffoldJABSQS000000000SAMN14675754
DT_66
GCA_013214845.1ScaffoldJABSQC000000000SAMN14675738
DT_50
GCA_013214765.1ScaffoldJABSQD000000000SAMN14675739
DT_51
GCA_013215685.1ScaffoldJABSQU000000000SAMN14675756
DT_68
GCA_013215715.1ScaffoldJABSQT000000000SAMN14675755
DT_67
GCA_013215615.1ScaffoldJABSQX000000000SAMN14675759
DT_71
GCA_013215605.1ScaffoldJABSQW000000000SAMN14675758
DT_70
GCA_013215565.1ScaffoldJABSQV000000000SAMN14675757
DT_69
GCA_013215525.1ScaffoldJABSQY000000000SAMN14675760
DT_72
GCA_022969015.1ScaffoldJALJPI000000000SAMN25998904
ALOHA_DT_133
GCA_013215285.1ScaffoldJABSRD000000000SAMN14675765
DT_77
GCA_013215505.1ScaffoldJABSQZ000000000SAMN14675761
DT_73
GCA_013215445.1ScaffoldJABSRA000000000SAMN14675762
DT_74
GCA_013215375.1ScaffoldJABSRB000000000SAMN14675763
DT_75
GCA_004566175.1ContigSPLH00000000SAMN11163854
CSH_ALOHA_XIX_Bin_8
GCA_013215245.1ScaffoldJABSRE000000000SAMN14675766
DT_78
GCA_013215275.1ContigJABSRF000000000SAMN14675767
DT_79
GCA_013215165.1ScaffoldJABSRG000000000SAMN14675768
DT_80
GCA_013215175.1ContigJABSRH000000000SAMN14675769
DT_81
GCA_013215155.1ScaffoldJABSRI000000000SAMN14675770
DT_82
GCA_013214315.1ScaffoldJABSRJ000000000SAMN14675771
DT_83
GCA_013215775.1ScaffoldJABSQO000000000SAMN14675750
DT_62
GCA_013215825.1ScaffoldJABSQN000000000SAMN14675749
DT_61
GCA_013215805.1ScaffoldJABSQM000000000SAMN14675748
DT_60
GCA_013214585.1ContigJABSRL000000000SAMN14675773
DT_85
GCA_013214455.1ScaffoldJABSRM000000000SAMN14675774
DT_86
GCA_013213915.1ScaffoldJABSRK000000000SAMN14675772
DT_84
GCA_013214025.1ScaffoldJABSRN000000000SAMN14675775
DT_87
GCA_013213925.1ScaffoldJABSRO000000000SAMN14675776
DT_88
GCA_013215145.1ScaffoldJABSRP000000000SAMN14675777
DT_89
GCA_022968985.1ScaffoldJALJPK000000000SAMN25998906
ALOHA_DT_135
GCA_022968975.1ScaffoldJALJPL000000000SAMN25998907
ALOHA_DT_136
GCA_022969035.1ScaffoldJALJPJ000000000SAMN25998905
ALOHA_DT_134
GCA_013215055.1ScaffoldJABSRQ000000000SAMN14675778
DT_90
GCA_013215025.1ScaffoldJABSRR000000000SAMN14675779
DT_91
GCA_013214905.1ScaffoldJABSRV000000000SAMN14675783
DT_95
GCA_013214685.1ContigJABSRW000000000SAMN14675784
DT_96
GCA_022969045.1ContigJALJPM000000000SAMN25998908
ALOHA_DT_137
GCA_013214695.1ScaffoldJABSRX000000000SAMN14675785
DT_97
GCA_013214715.1ScaffoldJABSSB000000000SAMN14675789
DT_101
GCA_013214665.1ScaffoldJABSSA000000000SAMN14675788
DT_100
GCA_013214635.1ScaffoldJABSSC000000000SAMN14675790
DT_102
GCA_013214575.1ScaffoldJABSSD000000000SAMN14675791
DT_103
GCA_004566265.1ContigSPLB00000000SAMN11163848
CSH_ALOHA_XIX_Bin_3
GCA_013214565.1ContigJABSSE000000000SAMN14675792
DT_104
GCA_013214485.1ScaffoldJABSSF000000000SAMN14675793
DT_105
GCA_013214525.1ContigJABSSG000000000SAMN14675794
DT_106
GCA_022968935.1ContigJALJPP000000000SAMN25998911
ALOHA_DT_140
GCA_013214505.1ScaffoldJABSSH000000000SAMN14675795
DT_107
GCA_013214075.1ScaffoldJABSSI000000000SAMN14675796
DT_108
GCA_013214345.1ScaffoldJABSSJ000000000SAMN14675797
DT_109
GCA_013214265.1ScaffoldJABSSK000000000SAMN14675798
DT_110
GCA_013214355.1ScaffoldJABSSL000000000SAMN14675799
DT_111
GCA_022968875.1ScaffoldJALJPQ000000000SAMN25998912
ALOHA_DT_141
GCA_013214165.1ScaffoldJABSSM000000000SAMN14675800
DT_112
GCA_004566245.1ContigSPLD00000000SAMN11163850
CSH_ALOHA_XIX_Bin_2
GCA_013214105.1ScaffoldJABSSN000000000SAMN14675801
DT_113
GCA_013213965.1ScaffoldJABSSR000000000SAMN14675805
DT_117
GCA_013213905.1ScaffoldJABSSQ000000000SAMN14675804
DT_116
GCA_013214045.1ScaffoldJABSSS000000000SAMN14675806
DT_118
GCA_013213975.1ScaffoldJABSST000000000SAMN14675807
DT_119
GCA_013213835.1ScaffoldJABSSU000000000SAMN14675808
DT_120
GCA_013213875.1ScaffoldJABSSV000000000SAMN14675809
DT_121
GCA_022968885.1ContigJALJPR000000000SAMN25998913
ALOHA_DT_142
GCA_004566355.1ContigSPKZ00000000SAMN11192286
-
SRA Data Details
ParameterValue
Data volume, Gbases742
Data volume, Tbytes0.35

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center