lake water metagenome (ID 464361) - BioProject

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Accession: PRJNA464361 ID: 464361

lake water metagenome

lake water metagenome Metagenome

Metagenomic sequencing of free-living and particle-attached microbial communities in western Lake Erie cyanobacterial blooms in 2014

Accession	PRJNA464361
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	lake water metagenome[Taxonomy ID: 1647806] unclassified sequences; metagenomes; ecological metagenomes; lake water metagenome
Publications	Yancey CE et al., "Transcriptionally active nitrogen fixation and biosynthesis of diverse secondary metabolites by Dolichospermum and Aphanizomenon-like Cyanobacteria in western Lake Erie Microcystis blooms.", Harmful Algae, 2023 May;124:102408
Submission	Registration date: 12-Sep-2021 University of Michigan
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	147
SRA Experiments	30
Publications
PubMed	1
Other datasets
BioSample	163
Assembly	147

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

83
64
147

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_021299755.1	JAJTES000000000	SAMN23604973	49624_E11	Acetobacteraceae bacterium
GCA_021298095.1	JAJTEB000000000	SAMN23604990	49628_E41	Acidibacter sp.
GCA_021298475.1	JAJTFI000000000	SAMN23604957	49618_E28	Actinomycetota bacterium
GCA_021298245.1	JAJTDZ000000000	SAMN23604992	49628_E51	Algoriphagus sp.
GCA_021299975.1	JAJTEV000000000	SAMN23604970	49621_E10	Algoriphagus sp.
GCA_021298215.1	JAJTEE000000000	SAMN23604987	49628_E19	Alphaproteobacteria bacterium
GCA_021297975.1	JAJTHO000000000	SAMN23604899	CoA8_M99	Alphaproteobacteria bacterium
GCA_021298595.1	JAJTHL000000000	SAMN23604902	CoA8N_C25	Alphaproteobacteria bacterium
GCA_021300315.1	JAJTDY000000000	SAMN23604993	49628_E55	Anabaena sp. 49628_E55
GCA_021300225.1	JAJTDN000000000	SAMN23605004	49633_E8	Anabaena sp. 49633_E8
GCA_021297915.1	JAJTGT000000000	SAMN23604920	CoA2_C59	Anabaena sp. CoA2_C59
GCA_021297875.1	JAJTGM000000000	SAMN23604927	49613_E12	Bacteroidota bacterium
GCA_021300195.1	JAJTIE000000000	SAMN23604883	CoA8_C16	Bacteroidota bacterium
GCA_021299855.1	JAJTEY000000000	SAMN23604967	49618_E68	Bacteroidota bacterium
GCA_021299105.1	JAJTFV000000000	SAMN23604944	49614_E21	Bacteroidota bacterium
GCA_021300035.1	JAJTHT000000000	SAMN23604894	CoA8_M57	Betaproteobacteria bacterium
GCA_021300125.1	JAJTHX000000000	SAMN23604890	CoA8_M33.1	Betaproteobacteria bacterium
GCA_021297825.1	JAJTGS000000000	SAMN23604921	CoA2_C61	Betaproteobacteria bacterium
GCA_021298815.1	JAJTHE000000000	SAMN23604909	CoA8N_M60.1	Betaproteobacteria bacterium
GCA_021298715.1	JAJTEA000000000	SAMN23604991	49628_E42	Betaproteobacteria bacterium
GCA_021298375.1	JAJTFE000000000	SAMN23604961	49618_E50	Blastopirellula sp.
GCA_019931185.1	JAINDK000000000	SAMN20863205	CoA8 C33	Bryobacter sp. CoA8 C33
GCA_019931245.1	JAINDL000000000	SAMN20863144	CoA2 C42	Bryobacteraceae bacterium CoA2 C42
GCA_021294915.1	JAJTDC000000000	SAMN23605015	53603_E6	Burkholderiaceae bacterium
GCA_021297955.1	JAJTGV000000000	SAMN23604918	CoA2_C48.1	Burkholderiaceae bacterium
GCA_021300435.1	JAJTDL000000000	SAMN23605006	49638_E11	Burkholderiaceae bacterium
GCA_021299895.1	JAJTEX000000000	SAMN23604968	49618_E8	Burkholderiaceae bacterium
GCA_021299735.1	JAJTEM000000000	SAMN23604979	49624_E46	Burkholderiales bacterium
GCA_021300475.1	JAJTDO000000000	SAMN23605003	49632_E5.1	Burkholderiales bacterium
GCA_021298905.1	JAJTHS000000000	SAMN23604895	CoA8_M58	Burkholderiales bacterium
GCA_021298875.1	JAJTHJ000000000	SAMN23604904	CoA8N_M101	Burkholderiales bacterium
GCA_021299565.1	JAJTHA000000000	SAMN23604913	CoA8N_V22.1	Candidatus Caenarcanales bacterium
GCA_021299995.1	JAJTIA000000000	SAMN23604887	CoA8_M11	Candidatus Jidaibacter sp.
GCA_021298045.1	JAJTHY000000000	SAMN23604889	CoA8_M28	Candidatus Jidaibacter sp.
GCA_021299955.1	JAJTFQ000000000	SAMN23604949	49614_E54	Chitinophagaceae bacterium
GCA_021299805.1	JAJTET000000000	SAMN23604972	49621_E24	Chitinophagaceae bacterium
GCA_021299175.1	JAJTFY000000000	SAMN23604941	49613_E57	Chitinophagaceae bacterium
GCA_021299135.1	JAJTFT000000000	SAMN23604946	49614_E51	Chloroflexaceae bacterium
GCA_021299555.1	JAJTGH000000000	SAMN23604932	49613_E28	Comamonadaceae bacterium
GCA_021299875.1	JAJTEW000000000	SAMN23604969	49618_E9	Comamonadaceae bacterium
GCA_021298995.1	JAJTGB000000000	SAMN23604938	49613_E45.2	Comamonadaceae bacterium
GCA_021298655.1	JAJTFK000000000	SAMN23604955	49618_E18	Cryomorphaceae bacterium
GCA_021298635.1	JAJTDR000000000	SAMN23605000	49632_E27	Cryomorphaceae bacterium
GCA_021298235.1	JAJTDX000000000	SAMN23604994	49628_E59	Cryomorphaceae bacterium
GCA_021299335.1	JAJTGF000000000	SAMN23604934	49613_E39	Cryomorphaceae bacterium
GCA_021300505.1	JAJTDQ000000000	SAMN23605001	49632_E31	Cryomorphaceae bacterium
GCA_021298515.1	JAJTFP000000000	SAMN23604950	49614_E6	Cyanobium sp. 49614_E6
GCA_021299795.1	JAJTEU000000000	SAMN23604971	49621_E14	Fimbriimonadaceae bacterium
GCA_021298795.1	JAJTHF000000000	SAMN23604908	CoA8N_M5	Fimbriimonadaceae bacterium
GCA_021298955.1	JAJTHH000000000	SAMN23604906	CoA8N_M18	Flammeovirgaceae bacterium
GCA_021298355.1	JAJTEH000000000	SAMN23604984	49625_E12	Flammeovirgaceae bacterium
GCA_021298015.1	JAJTGY000000000	SAMN23604915	42896_E20	Flammeovirgaceae bacterium
GCA_021299455.1	JAJTGQ000000000	SAMN23604923	42896M_C11	Flammeovirgaceae bacterium
GCA_021300095.1	JAJTHV000000000	SAMN23604892	CoA8_M5	Flammeovirgaceae bacterium
GCA_021300395.1	JAJTEO000000000	SAMN23604977	49624_E28	Fluviicola sp.
GCA_021299915.1	JAJTFF000000000	SAMN23604960	49618_E45	Gemmataceae bacterium
GCA_021299375.1	JAJTGR000000000	SAMN23604922	CoA2_M2	Gemmatimonadota bacterium
GCA_021298395.1	JAJTFH000000000	SAMN23604958	49618_E39.1	Gemmatimonadota bacterium
GCA_021298835.1	JAJTHG000000000	SAMN23604907	CoA8N_M4	Gemmatimonadota bacterium
GCA_021298855.1	JAJTHI000000000	SAMN23604905	CoA8N_M110	Gemmatimonas sp.
GCA_021298035.1	JAJTGX000000000	SAMN23604916	CoA2_C13	Hyphomicrobiales bacterium
GCA_021299265.1	JAJTGP000000000	SAMN23604924	42896M_C36	Hyphomonadaceae bacterium
GCA_021300555.1	JAJTEP000000000	SAMN23604976	49624_E23	Ignavibacteriota bacterium
GCA_021299715.1	JAJTEL000000000	SAMN23604980	49624_E47	Ilumatobacteraceae bacterium
GCA_021298195.1	JAJTEQ000000000	SAMN23604975	49624_E21	Ilumatobacteraceae bacterium
GCA_021298695.1	JAJTEC000000000	SAMN23604989	49628_E40	Ilumatobacteraceae bacterium
GCA_021298535.1	JAJTFZ000000000	SAMN23604940	49613_E51	Ilumatobacteraceae bacterium
GCA_021298435.1	JAJTFJ000000000	SAMN23604956	49618_E24	Ilumatobacteraceae bacterium
GCA_021300495.1	JAJTDK000000000	SAMN23605007	49638_E12	Limnohabitans sp.
GCA_021298895.1	JAJTHK000000000	SAMN23604903	CoA8N_E16	Luteolibacter sp.
GCA_021297925.1	JAJTHD000000000	SAMN23604910	CoA8N_M66.1	Lysobacteraceae bacterium
GCA_021299185.1	JAJTHZ000000000	SAMN23604888	CoA8_M120	Lysobacteraceae bacterium
GCA_021299355.1	JAJTGG000000000	SAMN23604933	49613_E30	Lysobacteraceae bacterium
GCA_021299435.1	JAJTGJ000000000	SAMN23604930	49613_E26	Lysobacterales bacterium
GCA_021300285.1	JAJTDH000000000	SAMN23605010	49638_E5	Microcystis sp. 49638_E5
GCA_021300255.1	JAJTDG000000000	SAMN23605011	53598_E5	Microcystis sp. 53598_E5
GCA_021300215.1	JAJTDD000000000	SAMN23605014	53602_E8	Microcystis sp. 53602_E8
GCA_030065495.1	JASJFC000000000	SAMN33435156	M49629_WE12	Microcystis sp. M49629_WE12
GCA_030065375.1	JASJFG000000000	SAMN33435160	M49636_WE2	Microcystis sp. M49636_WE2
GCA_030065465.1	JASJFD000000000	SAMN33435157	M49637_WE12	Microcystis sp. M49637_WE12
GCA_030067735.1	JASJFE000000000	SAMN33435158	M53598_WE2	Microcystis sp. M53598_WE2
GCA_030065385.1	JASJFH000000000	SAMN33435161	M53599_WE4	Microcystis sp. M53599_WE4
GCA_030065515.1	JASJFA000000000	SAMN33435154	M53600_WE12	Microcystis sp. M53600_WE12
GCA_030065405.1	JASJFI000000000	SAMN33435162	M53601_WE4	Microcystis sp. M53601_WE4
GCA_030065455.1	JASJFB000000000	SAMN33435155	M53602_WE12	Microcystis sp. M53602_WE12
GCA_030065435.1	JASJFF000000000	SAMN33435159	M53603_WE2	Microcystis sp. M53603_WE2
GCA_021300055.1	JAJTHU000000000	SAMN23604893	CoA8_M54.1	Nitrosomonadaceae bacterium
GCA_030065355.1	JASJEY000000000	SAMN33434852	LE14-WE12	Nostocales cyanobacterium LE14-WE12
GCA_030065335.1	JASJEZ000000000	SAMN33434853	LE14-WE4	Nostocales cyanobacterium LE14-WE4
GCA_021299075.1	JAJTFU000000000	SAMN23604945	49614_E48	Novosphingobium sp.
GCA_021299025.1	JAJTGA000000000	SAMN23604939	49613_E5	Opitutaceae bacterium
GCA_021299035.1	JAJTGD000000000	SAMN23604936	49613_E42	Oxalobacteraceae bacterium
GCA_021298975.1	JAJTGC000000000	SAMN23604937	49613_E43	Oxalobacteraceae bacterium
GCA_021298275.1	JAJTFS000000000	SAMN23604947	49614_E52	Oxalobacteraceae bacterium
GCA_021298555.1	JAJTGE000000000	SAMN23604935	49613_E41	Oxalobacteraceae bacterium
GCA_021298935.1	JAJTHR000000000	SAMN23604896	CoA8_M59.1	Parachlamydia sp.
GCA_021300115.1	JAJTHW000000000	SAMN23604891	CoA8_M46	Phenylobacterium sp.
GCA_021298495.1	JAJTFL000000000	SAMN23604954	49615_E5	Phenylobacterium sp.
GCA_021297895.1	JAJTHN000000000	SAMN23604900	CoA8_V101	Phycisphaeraceae bacterium
GCA_021299385.1	JAJTGZ000000000	SAMN23604914	42896_E15	Phycisphaeraceae bacterium
GCA_021300155.1	JAJTID000000000	SAMN23604884	CoA8_C32	Pirellula sp.
GCA_021300015.1	JAJTFB000000000	SAMN23604964	49618_E55.4	Pirellula sp.
GCA_021299695.1	JAJTEK000000000	SAMN23604981	49624_E51.1	Pirellula sp.
GCA_021298405.1	JAJTFG000000000	SAMN23604959	49618_E42	Planctomyces sp.
GCA_021297795.1	JAJTGL000000000	SAMN23604928	49613_E24.1	Planctomycetaceae bacterium
GCA_021298315.1	JAJTFC000000000	SAMN23604963	49618_E55.3	Planctomycetaceae bacterium
GCA_021297815.1	JAJTGK000000000	SAMN23604929	49613_E25	Planctomycetaceae bacterium
GCA_021294835.1	JAJTDF000000000	SAMN23605012	53600_E7	Planctomycetaceae bacterium
GCA_021299395.1	JAJTGI000000000	SAMN23604931	49613_E27	Planctomycetaceae bacterium
GCA_021299775.1	JAJTFD000000000	SAMN23604962	49618_E55.1	Planctomycetaceae bacterium
GCA_021300535.1	JAJTED000000000	SAMN23604988	49628_E33.1	Planctomycetaceae bacterium
GCA_021299235.1	JAJTGO000000000	SAMN23604925	42896M_M3	Pseudanabaena sp. 42896M_M3
GCA_021298775.1	JAJTHP000000000	SAMN23604898	CoA8_M7	Pseudanabaena sp. CoA8_M7
GCA_021298175.1	JAJTDW000000000	SAMN23604995	49628_E63	Pseudomonadota bacterium
GCA_021299675.1	JAJTIF000000000	SAMN23604882	CoA8_C15.2	Pseudomonadota bacterium
GCA_021300175.1	JAJTIC000000000	SAMN23604885	CoA8_M100	Pseudomonadota bacterium
GCA_021300335.1	JAJTEG000000000	SAMN23604985	49625_E6	Rhodobacter sp.
GCA_021300415.1	JAJTEI000000000	SAMN23604983	49624_E8	Rhodobacter sp.
GCA_021300375.1	JAJTEJ000000000	SAMN23604982	49624_E59	Rickettsiaceae bacterium
GCA_021300075.1	JAJTIB000000000	SAMN23604886	CoA8_M105.1	Rickettsiales bacterium
GCA_021299465.1	JAJTHB000000000	SAMN23604912	CoA8N_M8	Rickettsiales bacterium
GCA_021298605.1	JAJTDS000000000	SAMN23604999	49632_E25	Rickettsiales bacterium
GCA_021299005.1	JAJTGN000000000	SAMN23604926	42896M_V12	Roseomonas sp.
GCA_021300575.1	JAJTDM000000000	SAMN23605005	49636_E6	Rubrivivax sp.
GCA_021298085.1	JAJTDE000000000	SAMN23605013	53601_E5	Rubrivivax sp.
GCA_021297985.1	JAJTGU000000000	SAMN23604919	CoA2_C53	Rubrivivax sp.
GCA_021298075.1	JAJTGW000000000	SAMN23604917	CoA2_C44.1	Rubrivivax sp.
GCA_021299835.1	JAJTER000000000	SAMN23604974	49624_E15	Saprospiraceae bacterium
GCA_021298335.1	JAJTEZ000000000	SAMN23604966	49618_E65	Saprospiraceae bacterium
GCA_021298575.1	JAJTFM000000000	SAMN23604953	49614_E9	Saprospiraceae bacterium
GCA_021298755.1	JAJTHQ000000000	SAMN23604897	CoA8_M65	Sediminibacterium sp.
GCA_021299935.1	JAJTFO000000000	SAMN23604951	49614_E65.1	Sediminibacterium sp.
GCA_021300265.1	JAJTDI000000000	SAMN23605009	49638_E23	Sediminibacterium sp.
GCA_021299145.1	JAJTFX000000000	SAMN23604942	49613_E75.1	Sediminibacterium sp.
GCA_021300455.1	JAJTDP000000000	SAMN23605002	49632_E33	Sediminibacterium sp.
GCA_021299095.1	JAJTFW000000000	SAMN23604943	49613_E9	Sphingobacteriales bacterium
GCA_021299635.1	JAJTFA000000000	SAMN23604965	49618_E60	Sphingobacteriales bacterium
GCA_021297855.1	JAJTHM000000000	SAMN23604901	CoA8_V48	Sphingobacteriales bacterium
GCA_021298155.1	JAJTEN000000000	SAMN23604978	49624_E34	Sphingobacteriales bacterium
GCA_021300355.1	JAJTEF000000000	SAMN23604986	49628_E11	Sphingomonadaceae bacterium
GCA_021298455.1	JAJTFR000000000	SAMN23604948	49614_E53	Sphingomonadales bacterium
GCA_021294895.1	JAJTDJ000000000	SAMN23605008	49638_E22	Streptomycetaceae bacterium
GCA_021298135.1	JAJTDV000000000	SAMN23604996	49632_E12	Terrimonas sp.
GCA_021299615.1	JAJTHC000000000	SAMN23604911	CoA8N_M69.1	Vampirovibrionales bacterium
GCA_021298725.1	JAJTDU000000000	SAMN23604997	49632_E14	Verrucomicrobiaceae bacterium
GCA_021298675.1	JAJTDT000000000	SAMN23604998	49632_E16	Verrucomicrobiia bacterium
GCA_021298285.1	JAJTFN000000000	SAMN23604952	49614_E7	Verrucomicrobium sp.

SRA Data Details

Parameter	Value
Data volume, Gbases	612
Data volume, Tbytes	0.34

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