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Accession: PRJNA396163 ID: 396163

Phytophthora fragariae and rubi

Isolates of two closely related phytophthora species causing either red core disease on Strawberry (P.fragariae) or Raspberry root rot (P.rubi). Genome sequencing and assembly

Investigating the genetic variation between isolates of two closely related pathogen species. More...
AccessionPRJNA396163
Data TypeGenome sequencing and assembly
ScopeMultispecies
OrganismPhytophthora[Taxonomy ID: 4783]
Eukaryota; Sar; Stramenopiles; Oomycota; Peronosporales; Peronosporaceae; Phytophthora
PublicationsAdams TM et al., "Genomic Investigation of the Strawberry Pathogen Phytophthora fragariae Indicates Pathogenicity Is Associated With Transcriptional Variation in Three Key Races.", Front Microbiol, 2020;11:490
SubmissionRegistration date: 4-Dec-2019
NIAB EMR
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)107655
WGS master14
SRA Experiments27
Protein Sequences487734
Publications
PubMed1
PMC1
Other datasets
BioSample16
Assembly13
SRA Data Details
ParameterValue
Data volume, Gbases513
Data volume, Tbytes0.24

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  • Phytophthora fragariae and rubi
    Phytophthora fragariae and rubi
    Isolates of two closely related phytophthora species causing either red core disease on Strawberry (P.fragariae) or Raspberry root rot (P.rubi). Genome sequencing and assembly
    BioProject

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