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Accession: PRJNA386519 ID: 386519

Whole Genome Resequencing in Rainbow Trout

We performed high coverage whole genome resequencing of 61 unrelated samples, representing a wide range of rainbow trout and steelhead populations, with 49 new samples from the US added to 12 samples that we previously used for SNP discovery from AquaGen (Norway). More...
AccessionPRJNA386519
Data TypeRaw sequence reads
ScopeMultispecies
Grants
  • "Ecological drivers of transmission, emergence, and displacement of an aquatic virus in fish hosts" (Grant ID 2012-67015-19960, US Department of Agriculture, National Institute of Food and Agriculture, Agriculture and Food Research Initiative)
  • "Homozygous Clonal Rainbow Trout Lines as Genomic Resources" (Grant ID 2015-07185, US Department of Agriculture, National Institute of Food and Agriculture, Agriculture and Food Research Initiative)
  • "Integrated Research Approaches for Improving Production Efficiency in Salmonids" (Grant ID 8082-31000-012, US Department of Agriculture, Agricultural Research Service)
  • "Generating Genome Resources for Rainbow Trout" (Grant ID 208338/E40, Research Council of Norway)
SubmissionRegistration date: 12-May-2017
USDA/ARS
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments61
Other datasets
BioSample61
SRA Data Details
ParameterValue
Data volume, Gbases2,284
Data volume, Tbytes1.02

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