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Accession: PRJNA351246 ID: 351246

Mus musculus (house mouse)

Integrative analysis of single-cell ATAC-seq and RNA-seq using Self-Organizing Maps [scRNA-Seq]

See Genome Information for Mus musculus
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This project is a component of the Integrative analysis of single-cell ATAC-seq and RNA-seq using Self-Organizing Maps
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1 additional project is a component of the Integrative analysis of single-cell ATAC-seq and RNA-seq using Self-Organizing Maps.
76083 additional projects are related by organism.
We have developed a computational approach that uses self-organizing maps for integrative genomic analysis. More...
AccessionPRJNA351246; GEO: GSE89280
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismMus musculus[Taxonomy ID: 10090]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus; Mus musculus
PublicationsJansen C et al., "Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps.", PLoS Comput Biol, 2019 Nov;15(11):e1006555
SubmissionRegistration date: 28-Oct-2016
UCI
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments568
Publications
PubMed1
PMC1
Other datasets
BioSample568
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes3
SRA Data Details
ParameterValue
Data volume, Gbases141
Data volume, Mbytes69799

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  • Mus musculus
    Mus musculus
    Integrative analysis of single-cell ATAC-seq and RNA-seq using Self-Organizing Maps [scRNA-Seq]
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