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Accession: PRJNA306895 ID: 306895

Bacteria

BRD-relevant bacteria

Sequence the four common species of bacteria related to bovine respiratory disease
AccessionPRJNA306895
Data TypeGenome sequencing and assembly
ScopeMultispecies
SubmissionRegistration date: 23-Dec-2015
University of California, Davis
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)7002
WGS master100
SRA Experiments104
Other datasets
BioSample104
Assembly100
Assembly details:
Assembly levelNumber of Assemblies
79
21
100
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_001929895.1ContigLQCX00000000SAMN04366493
0090HS
GCA_001931445.1ContigLQGJ00000000SAMN04366583
3782HS
GCA_001931415.1ScaffoldLQGI00000000SAMN04366582
3768HS
GCA_001931405.1ScaffoldLQGF00000000SAMN04366579
3669HS
GCA_001931375.1ScaffoldLQFZ00000000SAMN04366573
3473HS
GCA_001931295.1ScaffoldLQFS00000000SAMN04366566
3275HS
GCA_001931095.1ScaffoldLQGL00000000SAMN04366585
3874HS
GCA_001931085.1ScaffoldLQGK00000000SAMN04366584
3849HS
GCA_001931045.1ScaffoldLQGH00000000SAMN04366581
3758HS
GCA_001931035.1ContigLQGG00000000SAMN04366580
3692HS
GCA_001931025.1ScaffoldLQGE00000000SAMN04366578
3605HS
GCA_001931005.1ScaffoldLQGD00000000SAMN04366577
3570HS
GCA_001930975.1ScaffoldLQGC00000000SAMN04366576
3556HS
GCA_001930825.1ScaffoldLQFO00000000SAMN04366562
3260HS
GCA_001930785.1ScaffoldLQFN00000000SAMN04366561
3216HS
GCA_001930775.1ScaffoldLQFM00000000SAMN04366560
3171HS
GCA_001931285.1ScaffoldLQFP00000000SAMN04366563
32754MH
GCA_001931195.1ScaffoldLQGQ00000000SAMN04366590
63667MH
GCA_001931365.1ScaffoldLQFX00000000SAMN04366571
3384MH
GCA_001931345.1ScaffoldLQFW00000000SAMN04366570
3369MH
GCA_001930735.1ScaffoldLQFK00000000SAMN04366558
3045MH
GCA_001930695.1ScaffoldLQFI00000000SAMN04366556
3022MH
GCA_001930685.1ScaffoldLQFG00000000SAMN04366554
2969MH
GCA_001930625.1ScaffoldLQFD00000000SAMN04366551
2930MH
GCA_001930615.1ScaffoldLQEZ00000000SAMN04366547
2887MH
GCA_001930585.1ScaffoldLQEX00000000SAMN04366545
2769MH
GCA_001930505.1ScaffoldLQEP00000000SAMN04366537
2612MH
GCA_001930475.1ScaffoldLQEK00000000SAMN04366532
2578MH
GCA_001930855.1ScaffoldLQFR00000000SAMN04366565
327518MH
GCA_001930845.1ScaffoldLQFQ00000000SAMN04366564
327511MH
GCA_001930935.1ScaffoldLQGA00000000SAMN04366574
3483MH
GCA_001929515.1ScaffoldLQDN00000000SAMN04366509
23209MH
GCA_001929455.1ScaffoldLQCY00000000SAMN04366494
2125MH
GCA_001929885.1ScaffoldLQEV00000000SAMN04366543
2700MH
GCA_001930025.1ScaffoldLQDF00000000SAMN04366501
2190MH
GCA_001929965.1ScaffoldLQDD00000000SAMN04366499
2165MH
GCA_001929775.1ScaffoldLQEU00000000SAMN04366542
2683MH
GCA_001929715.1ScaffoldLQEM00000000SAMN04366534
2597MH
GCA_001929735.1ScaffoldLQER00000000SAMN04366539
2633MH
GCA_001929665.1ScaffoldLQEJ00000000SAMN04366531
2543MH
GCA_001929645.1ScaffoldLQEG00000000SAMN04366528
2512MH
GCA_001930365.1ScaffoldLQEB00000000SAMN04366523
2436MH
GCA_001930325.1ScaffoldLQDZ00000000SAMN04366521
2428MH
GCA_001930195.1ScaffoldLQDK00000000SAMN04366506
2297MH
GCA_001930105.1ScaffoldLQDO00000000SAMN04366510
232020MH
GCA_001929505.1ScaffoldLQDM00000000SAMN04366508
2307MB
GCA_001929605.1ContigLQED00000000SAMN04366525
2497MB
GCA_001930055.1ContigLQDG00000000SAMN04366502
2223MB
GCA_001930035.1ContigLQDH00000000SAMN04366503
2255MB
GCA_001930175.1ContigLQDR00000000SAMN04366513
2335MB
GCA_001930165.1ContigLQDJ00000000SAMN04366505
2297MB
GCA_001930145.1ContigLQDP00000000SAMN04366511
2320MB
GCA_001930315.1ContigLQDX00000000SAMN04366519
2403MB
GCA_001930395.1ContigLQEF00000000SAMN04366527
2512MB
GCA_001930255.1ContigLQDV00000000SAMN04366517
2389MB
GCA_001930245.1ContigLQDU00000000SAMN04366516
2377MB
GCA_001930225.1ContigLQDT00000000SAMN04366515
2351MB
GCA_001929835.1ContigLQFC00000000SAMN04366550
2930MB
GCA_001929825.1ContigLQEY00000000SAMN04366546
2887MB
GCA_001929955.1ContigLQDB00000000SAMN04366497
2154MB
GCA_001929945.1ContigLQDA00000000SAMN04366496
2133MB
GCA_001931315.1ContigLQFU00000000SAMN04366568
3308MB
GCA_001930545.1ContigLQEW00000000SAMN04366544
2769MB
GCA_001930535.1ContigLQEO00000000SAMN04366536
2612MB
GCA_001930655.1ScaffoldLQFF00000000SAMN04366553
2969MB
GCA_001929905.1ScaffoldLQCZ00000000SAMN04366495
2125PM
GCA_001929985.1ScaffoldLQDE00000000SAMN04366500
2165PM
GCA_001929855.1ScaffoldLQFE00000000SAMN04366552
2930PM
GCA_001929785.1ScaffoldLQEQ00000000SAMN04366538
2612PM
GCA_001929765.1ScaffoldLQES00000000SAMN04366540
2633PM
GCA_001929655.1ScaffoldLQEH00000000SAMN04366529
2512PM
GCA_001929705.1ScaffoldLQEL00000000SAMN04366533
2578PM
GCA_001930385.1ScaffoldLQEA00000000SAMN04366522
2428PM
GCA_001930305.1ScaffoldLQDS00000000SAMN04366514
2335PM
GCA_001930285.1ScaffoldLQDW00000000SAMN04366518
2389PM
GCA_001930115.1ScaffoldLQDL00000000SAMN04366507
2297PM
GCA_001930065.1ScaffoldLQDI00000000SAMN04366504
2267PM
GCA_001929595.1ScaffoldLQEC00000000SAMN04366524
2450PM
GCA_001929565.1ScaffoldLQDY00000000SAMN04366520
2403PM
GCA_001929525.1ScaffoldLQDQ00000000SAMN04366512
2320PM
GCA_001929465.1ScaffoldLQDC00000000SAMN04366498
2154PM
GCA_001931185.1ScaffoldLQGP00000000SAMN04366589
657BPM
GCA_001931155.1ScaffoldLQGO00000000SAMN04366588
654BPM
GCA_001931145.1ScaffoldLQGN00000000SAMN04366587
69APM
GCA_001931115.1ScaffoldLQGM00000000SAMN04366586
68BPM
GCA_001931265.1ScaffoldLQFH00000000SAMN04366555
2969PM
GCA_001931235.1ScaffoldLQFB00000000SAMN04366549
2901PM
GCA_001931225.1ScaffoldLQGR00000000SAMN04366591
8522APM
GCA_001930605.1ScaffoldLQFA00000000SAMN04366548
2887PM
GCA_001930705.1ScaffoldLQFJ00000000SAMN04366557
3022PM
GCA_001930765.1ScaffoldLQFL00000000SAMN04366559
3045PM
GCA_001930525.1ScaffoldLQET00000000SAMN04366541
2668PM
GCA_001930465.1ScaffoldLQEN00000000SAMN04366535
2597PM
GCA_001930445.1ScaffoldLQEI00000000SAMN04366530
2526PM
GCA_001930405.1ScaffoldLQEE00000000SAMN04366526
2497PM
GCA_001930925.1ScaffoldLQFY00000000SAMN04366572
3384PM
GCA_001930895.1ScaffoldLQFV00000000SAMN04366569
3347PM
GCA_001930875.1ScaffoldLQFT00000000SAMN04366567
3275PM
GCA_001931455.1ScaffoldLQGS00000000SAMN04366592
J1APM
GCA_001930965.1ScaffoldLQGB00000000SAMN04366575
3483PM
SRA Data Details
ParameterValue
Data volume, Gbases55
Data volume, Mbytes37241

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