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Accession: PRJNA297777 ID: 297777

Acinetobacter

Acinetobacter whole-genome sequencing for hospital epidemology

See Genome Information for Acinetobacter baumannii
Using WGS to track hospital outbreaks of Acinetobacter baumannii
AccessionPRJNA297777
Data TypeGenome sequencing and assembly
ScopeMultispecies
OrganismAcinetobacter[Taxonomy ID: 469]
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter
Publications
  • Fitzpatrick MA et al., "Influence of ACB complex genospecies on clinical outcomes in a U.S. hospital with high rates of multidrug resistance.", J Infect, 2014 Sep 19;70(2):144-52
  • Ozer EA et al., "Draft Genome Sequence of Acinetobacter baumannii Strain ABBL099, a Multidrug-Resistant Clinical Outbreak Isolate with a Novel Multilocus Sequence Type.", Genome Announc, 2014 Sep 11;2(5)
Grants
  • "Mechanistic Studies of Patatin-like ToxinsBacterial Predictors of Severe Nosocomial PneumoniaExoU and the Pathogenesis of Pseudomonas Pneumonia" (Grant ID R01 AI053674, National Institute of Allergy and Infectious Diseases)
  • "Validating targets in p. aeruginosa type III secretion using chemical probes" (Grant ID R01 AI099269, National Institute of Allergy and Infectious Diseases)
  • "Translational Research Training in Infectious Diseases" (Grant ID T32 AI095207, National Institute of Allergy and Infectious Diseases)
  • "Pseudomonas aeruginosa Genomic Islands and Virulence" (Grant ID R01 AI075191, National Institute of Allergy and Infectious Diseases)
  • "Mechanism of Azithromycin Activity in Pseudomonas Infections" (Grant ID R21 AI088286, National Institute of Allergy and Infectious Diseases)
  • "Mediators of infection in the Pseudomonas aeruginosa accessory genome" (Grant ID MRSG-13-220-01 - MPC, American Cancer Society)
SubmissionRegistration date: 5-Oct-2015
Northwestern University Feinberg School of Medicine
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)60880
WGS master165
SRA Experiments165
Protein Sequences608548
Publications
PubMed2
PMC2
Other datasets
BioSample165
Assembly165
Assembly details:
Assembly levelNumber of Assemblies
165
165
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_001417545.1ContigLLIR00000000SAMN04145762
ABOB02
GCA_001417515.1ContigLLJG00000000SAMN04145777
ABOBEN
GCA_001417495.1ContigLLJD00000000SAMN04145774
ABOB12
GCA_001417485.1ContigLLIU00000000SAMN04145765
ABOB04_a
GCA_001416625.1ContigLLIP00000000SAMN04145760
ABBL149
GCA_001416635.1ContigLLIS00000000SAMN04145763
ABOB03
GCA_001416585.1ContigLLIM00000000SAMN04145757
ABBL144
GCA_001416565.1ContigLLIK00000000SAMN04145755
ABBL142
GCA_001416555.1ContigLLID00000000SAMN04145748
ABBL133
GCA_001416545.1ContigLLIA00000000SAMN04145745
ABBL130
GCA_001416515.1ContigLLHZ00000000SAMN04145744
ABBL129
GCA_001416495.1ContigLLJF00000000SAMN04145776
ABOB16
GCA_001416475.1ContigLLJE00000000SAMN04145775
ABOB15
GCA_001416465.1ContigLLJC00000000SAMN04145773
ABOB11
GCA_001416425.1ContigLLJB00000000SAMN04145772
ABOB10
GCA_001416705.1ContigLLIY00000000SAMN04145769
ABOB07
GCA_001416715.1ContigLLJA00000000SAMN04145771
ABOB09
GCA_001416395.1ContigLLIX00000000SAMN04145768
ABOB06_a
GCA_001416415.1ContigLLIZ00000000SAMN04145770
ABOB08
GCA_001416385.1ContigLLIV00000000SAMN04145766
ABOB04_b
GCA_001416355.1ContigLLIQ00000000SAMN04145761
ABOB01
GCA_001416665.1ContigLLIW00000000SAMN04145767
ABOB06
GCA_001416655.1ContigLLIT00000000SAMN04145764
ABOB04
GCA_001416315.1ContigLLIN00000000SAMN04145758
ABBL147
GCA_001416305.1ContigLLIL00000000SAMN04145756
ABBL143
GCA_001416275.1ContigLLIJ00000000SAMN04145754
ABBL141
GCA_001416255.1ContigLLII00000000SAMN04145753
ABBL140
GCA_001416235.1ContigLLIH00000000SAMN04145752
ABBL138
GCA_001416225.1ContigLLIG00000000SAMN04145751
ABBL137
GCA_001416165.1ContigLLIE00000000SAMN04145749
ABBL134
GCA_001416155.1ContigLLIC00000000SAMN04145747
ABBL132
GCA_001416145.1ContigLLIB00000000SAMN04145746
ABBL131
GCA_001416115.1ContigLLHV00000000SAMN04145740
ABBL125
GCA_001416095.1ContigLLHU00000000SAMN04145739
ABBL124
GCA_001416075.1ContigLLHT00000000SAMN04145738
ABBL123
GCA_001416035.1ContigLLHF00000000SAMN04145724
ABBL106
GCA_001416005.1ContigLLHB00000000SAMN04145720
ABBL101
GCA_001416015.1ContigLLHC00000000SAMN04145721
ABBL102
GCA_001415985.1ContigLLHA00000000SAMN04145719
ABBL100
GCA_001415965.1ContigLLGY00000000SAMN04145716
ABBL097
GCA_001415915.1ContigLLGV00000000SAMN04145713
ABBL094
GCA_001415875.1ContigLLHX00000000SAMN04145742
ABBL127
GCA_001415735.1ContigLLHM00000000SAMN04145731
ABBL115
GCA_001415715.1ContigLLHL00000000SAMN04145730
ABBL114
GCA_001415695.1ContigLLHK00000000SAMN04145729
ABBL113
GCA_001415665.1ContigLLHI00000000SAMN04145727
ABBL110
GCA_001415645.1ContigLLHH00000000SAMN04145726
ABBL109
GCA_001415615.1ContigLLHG00000000SAMN04145725
ABBL107
GCA_001415595.1ContigLLHE00000000SAMN04145723
ABBL105
GCA_001415835.1ContigLLHS00000000SAMN04145737
ABBL122
GCA_001415815.1ContigLLHR00000000SAMN04145736
ABBL121
GCA_001415805.1ContigLLHP00000000SAMN04145734
ABBL118
GCA_001415785.1ContigLLHO00000000SAMN04145733
ABBL117
GCA_001415765.1ContigLLHN00000000SAMN04145732
ABBL116
GCA_001415535.1ContigLLGW00000000SAMN04145714
ABBL095
GCA_001415515.1ContigLLGU00000000SAMN04145712
ABBL093
GCA_001415505.1ContigLLGT00000000SAMN04145711
ABBL092
GCA_001415385.1ContigLLGJ00000000SAMN04145701
ABBL079
GCA_001415345.1ContigLLFZ00000000SAMN04145691
ABBL069
GCA_001415355.1ContigLLGC00000000SAMN04145694
ABBL072
GCA_001415325.1ContigLLFV00000000SAMN04145687
ABBL067j
GCA_001415295.1ContigLLFU00000000SAMN04145686
ABBL067i
GCA_001415275.1ContigLLGS00000000SAMN04145710
ABBL091
GCA_001415255.1ContigLLGP00000000SAMN04145707
ABBL088
GCA_001415465.1ContigLLGQ00000000SAMN04145708
ABBL089
GCA_001415435.1ContigLLGN00000000SAMN04145705
ABBL085
GCA_001415425.1ContigLLGM00000000SAMN04145704
ABBL083
GCA_001415215.1ContigLLGL00000000SAMN04145703
ABBL082
GCA_001415165.1ContigLLGG00000000SAMN04145698
ABBL076
GCA_001415095.1ContigLLGD00000000SAMN04145695
ABBL073
GCA_001415085.1ContigLLGB00000000SAMN04145693
ABBL071
GCA_001415065.1ContigLLGA00000000SAMN04145692
ABBL070
GCA_001414995.1ContigLLFT00000000SAMN04145685
ABBL067h
GCA_001415025.1ContigLLFY00000000SAMN04145690
ABBL068
GCA_001415015.1ContigLLFX00000000SAMN04145689
ABBL067l
GCA_001414985.1ContigLLFW00000000SAMN04145688
ABBL067k
GCA_001414905.1ContigLLFR00000000SAMN04145683
ABBL067f
GCA_001414935.1ContigLLFS00000000SAMN04145684
ABBL067g
GCA_001414925.1ContigLLFQ00000000SAMN04145682
ABBL067e
GCA_001414915.1ContigLLFE00000000SAMN04145670
ABBL059
GCA_001414805.1ContigLLFO00000000SAMN04145680
ABBL067b
GCA_001414815.1ContigLLFB00000000SAMN04145667
ABBL056
GCA_001414785.1ContigLLFN00000000SAMN04145679
ABBL067a
GCA_001414765.1ContigLLFM00000000SAMN04145678
ABBL067
GCA_001414885.1ContigLLFP00000000SAMN04145681
ABBL067c
GCA_001414865.1ContigLLFH00000000SAMN04145673
ABBL062
GCA_001414735.1ContigLLFL00000000SAMN04145677
ABBL066
GCA_001414685.1ContigLLFI00000000SAMN04145674
ABBL063
GCA_001414655.1ContigLLFG00000000SAMN04145672
ABBL061
GCA_001414645.1ContigLLFF00000000SAMN04145671
ABBL060
GCA_001414575.1ContigLLFC00000000SAMN04145668
ABBL057
GCA_001414565.1ContigLLFA00000000SAMN04145666
ABBL055
GCA_001433695.1ContigLLEH00000000SAMN04145664
ABBL053
GCA_001433675.1ContigLLDU00000000SAMN04145651
ABBL040
GCA_001433655.1ContigLLDT00000000SAMN04145650
ABBL039
GCA_001433355.1ContigLLEF00000000SAMN04145662
ABBL051
GCA_001433335.1ContigLLEG00000000SAMN04145663
ABBL052
GCA_001433275.1ContigLLDX00000000SAMN04145654
ABBL043
GCA_001433265.1ContigLLDV00000000SAMN04145652
ABBL041
GCA_001433245.1ContigLLED00000000SAMN04145660
ABBL049
GCA_001433205.1ContigLLDZ00000000SAMN04145656
ABBL045
GCA_001433155.1ContigLLDQ00000000SAMN04145647
ABBL036
GCA_001433145.1ContigLLDO00000000SAMN04145645
ABBL034
GCA_001433075.1ContigLLDI00000000SAMN04145639
ABBL028
GCA_001433055.1ContigLLEE00000000SAMN04145661
ABBL050
GCA_001433045.1ContigLLEC00000000SAMN04145659
ABBL048
GCA_001433005.1ContigLLDS00000000SAMN04145649
ABBL038
GCA_001433015.1ContigLLDY00000000SAMN04145655
ABBL044
GCA_001432965.1ContigLLDP00000000SAMN04145646
ABBL035
GCA_001432975.1ContigLLDR00000000SAMN04145648
ABBL037
GCA_001432925.1ContigLLDK00000000SAMN04145641
ABBL030
GCA_001432865.1ContigLLDH00000000SAMN04145638
ABBL027
GCA_001432895.1ContigLLDJ00000000SAMN04145640
ABBL029
GCA_001432825.1ContigLLCT00000000SAMN04145624
ABBL013
GCA_001432845.1ContigLLDG00000000SAMN04145637
ABBL026
GCA_001432785.1ContigLLCS00000000SAMN04145623
ABBL012
GCA_001432745.1ContigLLCN00000000SAMN04145618
ABBL007
GCA_001432755.1ContigLLCO00000000SAMN04145619
ABBL008
GCA_001432705.1ContigLLCK00000000SAMN04145615
ABBL004
GCA_001432685.1ContigLLCI00000000SAMN04145613
ABBL001
GCA_001432665.1ContigLLDF00000000SAMN04145636
ABBL025
GCA_001432625.1ContigLLDD00000000SAMN04145634
ABBL023
GCA_001432585.1ContigLLDC00000000SAMN04145633
ABBL022
GCA_001432595.1ContigLLDB00000000SAMN04145632
ABBL021
GCA_001432545.1ContigLLCY00000000SAMN04145629
ABBL018
GCA_001432535.1ContigLLDA00000000SAMN04145631
ABBL020
GCA_001432525.1ContigLLCX00000000SAMN04145628
ABBL017
GCA_001432445.1ContigLLCP00000000SAMN04145620
ABBL009
GCA_001432455.1ContigLLCR00000000SAMN04145622
ABBL011
GCA_001432425.1ContigLLCU00000000SAMN04145625
ABBL014
GCA_001432385.1ContigLLCM00000000SAMN04145617
ABBL006
GCA_001432375.1ContigLLCJ00000000SAMN04145614
ABBL003
GCA_000738845.1ContigJPDG00000000SAMN02867841
ABBL099
GCA_001415555.1ContigLLGZ00000000SAMN04145717
ABBL098
GCA_001414835.1ContigLLFD00000000SAMN04145669
ABBL058
GCA_001415395.1ContigLLGK00000000SAMN04145702
ABBL080
GCA_001433095.1ContigLLDM00000000SAMN04145643
ABBL032
GCA_001433125.1ContigLLDN00000000SAMN04145644
ABBL033
GCA_001433295.1ContigLLEA00000000SAMN04145657
ABBL046
GCA_001433225.1ContigLLEB00000000SAMN04145658
ABBL047
GCA_001432835.1ContigLLCZ00000000SAMN04145630
ABBL019
GCA_001432775.1ContigLLCQ00000000SAMN04145621
ABBL010
GCA_001433185.1ContigLLDW00000000SAMN04145653
ABBL042
GCA_001432935.1ContigLLDL00000000SAMN04145642
ABBL031
GCA_001432505.1ContigLLCW00000000SAMN04145627
ABBL016
GCA_001432435.1ContigLLCV00000000SAMN04145626
ABBL015
GCA_001432635.1ContigLLDE00000000SAMN04145635
ABBL024
GCA_001432715.1ContigLLCL00000000SAMN04145616
ABBL005
GCA_001416065.1ContigLLHQ00000000SAMN04145735
ABBL120
GCA_001415865.1ContigLLHW00000000SAMN04145741
ABBL126
GCA_001415245.1ContigLLGO00000000SAMN04145706
ABBL086
GCA_001414725.1ContigLLFK00000000SAMN04145676
ABBL065
GCA_001415145.1ContigLLGF00000000SAMN04145697
ABBL075
GCA_001415105.1ContigLLGE00000000SAMN04145696
ABBL074
GCA_001415185.1ContigLLGH00000000SAMN04145699
ABBL077
GCA_001415175.1ContigLLGI00000000SAMN04145700
ABBL078
GCA_001414705.1ContigLLFJ00000000SAMN04145675
ABBL064
GCA_001415485.1ContigLLGR00000000SAMN04145709
ABBL090
GCA_001415685.1ContigLLHJ00000000SAMN04145728
ABBL111
GCA_001415585.1ContigLLHD00000000SAMN04145722
ABBL103
GCA_001415935.1ContigLLGX00000000SAMN04145715
ABBL096
GCA_001415895.1ContigLLHY00000000SAMN04145743
ABBL128
GCA_001416185.1ContigLLIF00000000SAMN04145750
ABBL135
GCA_001416335.1ContigLLIO00000000SAMN04145759
ABBL148
GCA_001414585.1ContigLLEZ00000000SAMN04145665
ABBL054
SRA Data Details
ParameterValue
Data volume, Gbases258
Data volume, Tbytes0.18

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    Acinetobacter whole-genome sequencing for hospital epidemology
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