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Accession: PRJNA287460 ID: 287460

Pseudomonas

Genome sequencing and assembly of 26 lineages from the Pseudomonas syringae species complex

Genome sequencing and assembly of 26 lineages from the Pseudomonas syringae species complex, for the study of the genomic basis of adaptation onto woody host species
AccessionPRJNA287460
Data TypeGenome sequencing and assembly
ScopeMultispecies
OrganismPseudomonas[Taxonomy ID: 286]
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
PublicationsNowell RW et al., "Comparative genomics reveals genes significantly associated with woody hosts in the plant pathogen Pseudomonas syringae.", Mol Plant Pathol, 2016 Jul 15;17(9):1409-1424
Grants
  • "BBSRC DTG" (Grant ID BB/F017030/1, Biotechnology and Biological Sciences Research Council)
SubmissionRegistration date: 25-Jan-2016
University of Edinburgh
RelevanceEvolution
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)6321
WGS master26
SRA Experiments26
Protein Sequences134556
Publications
PubMed1
PMC1
Other datasets
BioSample26
Assembly26
Assembly details:
Assembly levelNumber of Assemblies
26
26
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_001535805.1ContigLIHY00000000SAMN03992212
CFBP 2897
GCA_001535785.1ContigLIHZ00000000SAMN03992210
HRI-W 5269
GCA_001535755.1ContigLIIA00000000SAMN03992207
HRI-W 5261
GCA_001535735.1ContigLIIB00000000SAMN03992203
2341
GCA_001535915.1ContigLIHQ00000000SAMN03992222
CFBP 1407
GCA_001537955.1ContigLILK00000000SAMN03992138
2329
GCA_001537965.1ContigLIKY00000000SAMN03782321
2113
GCA_001538045.1ContigLILH00000000SAMN03989044
2279
GCA_001537985.1ContigLILI00000000SAMN03991891
2306
GCA_001538085.1ContigLILL00000000SAMN03992139
2336
GCA_001538055.1ContigLIID00000000SAMN03992199
CFBP 2343
GCA_001538185.1ContigLILJ00000000SAMN03991981
2315
GCA_001538145.1ContigLIIE00000000SAMN03992196
CFBP 3226
GCA_001538155.1ContigLIIC00000000SAMN03992201
CFBP 5062
GCA_001535815.1ContigLIHX00000000SAMN03992215
CFBP 5067
GCA_001535725.1ContigLIHT00000000SAMN03992219
2340
GCA_001535905.1ContigLIHW00000000SAMN03992216
CFBP 1754
GCA_001535945.1ContigLIHR00000000SAMN03992221
HRI-W 7924
GCA_001535875.1ContigLIHS00000000SAMN03992220
HRI-W 7872
GCA_001535855.1ContigLIHU00000000SAMN03992218
2339
GCA_001535835.1ContigLIHV00000000SAMN03992217
CFBP 4220
GCA_001538095.1ContigLIIJ00000000SAMN03992187
CFBP 3846
GCA_001537945.1ContigLIIG00000000SAMN03992190
CFBP 6109
GCA_001538245.1ContigLIIH00000000SAMN03992189
CFBP 4217
GCA_001538205.1ContigLIII00000000SAMN03992188
CFBP 5140
GCA_001538255.1ContigLIIF00000000SAMN03992192
CFBP 4219
SRA Data Details
ParameterValue
Data volume, Gbases21
Data volume, Mbytes14176

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    Genome sequencing and assembly of 26 lineages from the Pseudomonas syringae species complex
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