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Accession: PRJNA273161 ID: 273161

groundwater metagenome

Reconstruction of 8 complete and 793 draft genomes from a Candidate Phyla Radiation (CPR)

Little is known about a radiation of phyla that may comprise >15% of the bacterial domain. More...
AccessionPRJNA273161
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismgroundwater metagenome[Taxonomy ID: 717931]
unclassified sequences; metagenomes; ecological metagenomes; groundwater metagenome
Publications
  • Castelle CJ et al., "Unusual respiratory capacity and nitrogen metabolism in a Parcubacterium (OD1) of the Candidate Phyla Radiation.", Sci Rep, 2017 Jan 9;7:40101
  • Brown CT et al., "Unusual biology across a group comprising more than 15% of domain Bacteria.", Nature, 2015 Jul 9;523(7559):208-11
SubmissionRegistration date: 7-May-2015
Banfield Lab, University of California, Berkeley
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)30247
WGS master789
Genomic DNA407
Protein Sequences633116
Publications
PubMed2
PMC1
Other datasets
BioSample803
PopSet1
Assembly797
Assembly details:
Assembly levelNumber of Assemblies
8
648
141
797
AssemblyLevelWGSChrsBioSampleIsolateTaxonomy
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GCA_001002835.1ScaffoldLCMV00000000
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GCA_000992805.1ScaffoldLBUX00000000
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GCA_001029735.1Complete genomeSAMN03319457
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GCA_001004665.1ScaffoldLCRO00000000
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GCA_001004725.1ScaffoldLCRP00000000
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GCA_001004755.1ContigLCRR00000000
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GCA_001004205.1ScaffoldLCQQ00000000
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GCA_000998545.1ScaffoldLCIP00000000
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GCA_001001005.1ScaffoldLCNV00000000
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GCA_001001885.1ScaffoldLCOF00000000
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GCA_001001955.1ContigLCNT00000000
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GCA_001029675.1Complete genomeSAMN03319974
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GCA_001003335.1ScaffoldLCOZ00000000
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GCA_000990865.1ContigLBQN00000000
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GCA_000999815.1ScaffoldLCIZ00000000
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GCA_000994385.1ContigLBZR00000000
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GCA_000991895.1ScaffoldLBSJ00000000
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GCA_000992925.1ScaffoldLBVE00000000
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GCA_000997385.1ContigLCBT00000000
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GCA_000992645.1ScaffoldLBUP00000000
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GCA_000995045.1ScaffoldLBWV00000000
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GCA_000994545.1ScaffoldLCAB00000000
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GCA_000997105.1ScaffoldLCEJ00000000
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GCA_000991695.1ScaffoldLBSA00000000
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GCA_000995285.1ScaffoldLBXE00000000
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GCA_000994865.1ScaffoldLCIV00000000
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GCA_001000645.1ContigLCHU00000000
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GCA_000998625.1ScaffoldLCIT00000000
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GCA_001001585.1ScaffoldLCKT00000000
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GCA_001004655.1ScaffoldLCRM00000000
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GCA_000999085.1ScaffoldLCFO00000000
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GCA_001001105.1ContigLCIN00000000
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GCA_001002025.1ScaffoldLCLL00000000
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GCA_001002485.1ContigLCME00000000
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    Reconstruction of 8 complete and 793 draft genomes from a Candidate Phyla Radiation (CPR)
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