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Accession: PRJEB2215 ID: 203958

Investigating the diversity of Vibrio cholerae isolates

BACKGROUND: Cholera is endemic in Bangladesh, with outbreaks reported annually. More...
AccessionPRJEB2215
Data TypeGenome sequencing and assembly
ScopeMonoisolate
Publications
  • Chowdhury F et al., "Vibrio cholerae Serogroup O139: Isolation from Cholera Patients and Asymptomatic Household Family Members in Bangladesh between 2013 and 2014.", PLoS Negl Trop Dis, 2015 Nov 12;9(11):e0004183
  • Mutreja A et al., "Evidence for several waves of global transmission in the seventh cholera pandemic.", Nature, 2011 Aug 24;477(7365):462-5
SubmissionRegistration date: 21-May-2013
SC
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)24679
WGS master186
Genomic DNA2
SRA Experiments2096
Protein Sequences719939
Publications
PubMed2
PMC2
Other datasets
BioSample2069
Assembly186
Assembly details:
Assembly levelNumber of Assemblies
1
179
6
186
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_001216205.1ScaffoldCTAP00000000
SAMEA1484011
MALTAa
GCA_001216445.1ScaffoldCTBC00000000
SAMEA1483978
V120
GCA_001216465.1ScaffoldCTAY00000000
SAMEA1483992
SPAINh
GCA_001216125.1ScaffoldCTCG00000000
SAMEA1484081
THAILAND
GCA_001215925.1ScaffoldCTAD00000000
SAMEA1483988
SPAINa
GCA_001214485.1ScaffoldCTCD00000000
SAMEA1484085
SPAINc
GCA_001214425.1ScaffoldCTBN00000000
SAMEA1484076
SPAINg
GCA_001218265.1ScaffoldCTOO00000000
SAMEA1484006
MALTAd
GCA_001219005.1ScaffoldCTMG00000000
SAMEA1483991
V115
GCA_001218985.1ScaffoldCTHW00000000
SAMEA1484074
V125
GCA_001219205.1ScaffoldCTFY00000000
SAMEA1484086
V116
GCA_001219185.1ScaffoldCTQM00000000
SAMEA1484094
V123
GCA_001219085.1ScaffoldCTPH00000000
SAMEA1484083
V126
GCA_001217945.1ContigCTLF00000000
SAMEA1484070
H145
GCA_001217545.1ScaffoldCTMH00000000
SAMEA1483982
H151
GCA_001217705.1ScaffoldCTQH00000000
SAMEA1484082
MOROCCO
GCA_001217585.1ScaffoldCTLI00000000
SAMEA1483990
H154
GCA_001216765.1ScaffoldCTAW00000000
SAMEA1483996
SOUTH_AFRICA
GCA_001221505.1ScaffoldCTMB00000000
SAMEA1484093
V124
GCA_001221565.1ScaffoldCTHB00000000
SAMEA1484139
ISRAEL
GCA_001222005.1ScaffoldCTOB00000000
SAMEA1484114
SPAINe
GCA_001221985.1ScaffoldCTQS00000000
SAMEA1484091
SPAINd
GCA_001221105.1ContigCTPA00000000
SAMEA1484099
V121
GCA_001221405.1ScaffoldCTQU00000000
SAMEA1484046
H149
GCA_001221365.1ScaffoldCTOZ00000000
SAMEA1484084
H153
GCA_001221225.1ScaffoldCTMS00000000
SAMEA1484055
FRANCEa
GCA_001220945.1ContigCTMZ00000000
SAMEA1484027
V119
GCA_001220885.1ScaffoldCTJY00000000
SAMEA1484102
SPAINi
GCA_001220785.1ScaffoldCTGF00000000
SAMEA1484117
H150
GCA_001219825.1ScaffoldCTND00000000
SAMEA1483989
FAR_EAST
GCA_001219805.1ScaffoldCTPS00000000
SAMEA1483999
SRI_LANKA
GCA_001219905.1ScaffoldCTNP00000000
SAMEA1484077
V122
GCA_001219445.1ScaffoldCTQA00000000
SAMEA1484014
UNITED_STATES
GCA_001220425.1ContigCTPG00000000
SAMEA1484121
FRANCEb
GCA_001220505.1ScaffoldCTQZ00000000
SAMEA1484079
SPAINf
GCA_001220465.1ScaffoldCTLQ00000000
SAMEA1484004
TURKEYa
GCA_001220445.1ScaffoldCTOQ00000000
SAMEA1483977
V118
GCA_001220645.1ScaffoldCTOS00000000
SAMEA1484089
SPAINb
GCA_001223545.1ScaffoldCTQD00000000
SAMEA1483976
V117
GCA_001223505.1ScaffoldCTIE00000000
SAMEA1484002
TURKEYb
GCA_001223345.1ContigCTHA00000000
SAMEA1484024
ITALY
GCA_001223265.1ScaffoldCTHK00000000
SAMEA1484012
MALTAb
GCA_001222165.1ScaffoldCTQY00000000
SAMEA1484015
MALTAc
GCA_001222405.1ScaffoldCTJP00000000
SAMEA1484009
CYPRUS
GCA_001222565.1ScaffoldCTLW00000000
SAMEA1484065
H148
GCA_001222965.1ScaffoldCTPI00000000
SAMEA1483993
GREECE
GCA_001222825.1ScaffoldCTOU00000000
SAMEA1484090
H147
GCA_001250235.2Complete genomeSAMEA889328
A19
GCA_001246285.1ScaffoldCWQG00000000
SAMEA889357
A346(2)
GCA_001250255.1ScaffoldCWPA00000000
SAMEA889380
A57
GCA_001249315.1ScaffoldCWOX00000000
SAMEA889368
4322
GCA_001249195.1ScaffoldCWPR00000000
SAMEA889273
A215
GCA_001249085.1ScaffoldCWNR00000000
SAMEA889231
MBRN14
GCA_001248945.1ScaffoldCWPS00000000
SAMEA889274
A213
GCA_001248905.1ScaffoldCWOM00000000
SAMEA889376
A70
GCA_001248865.1ScaffoldCWPN00000000
SAMEA889364
A193
GCA_001248845.1ScaffoldCWRC00000000
SAMEA889196
PRL18
GCA_001248645.1ScaffoldCWQT00000000
SAMEA889235
6214
GCA_001248505.1ContigCWRZ00000000
SAMEA889177
4519
GCA_001248465.1ScaffoldCWPH00000000
SAMEA889206
V212-1
GCA_001248365.1ScaffoldCWQB00000000
SAMEA889214
A397
GCA_001247835.1ScaffoldCWNK00000000
SAMEA889332
1627
GCA_001247885.1ScaffoldCWQN00000000
SAMEA889175
IDHO1_726
GCA_001248235.1ScaffoldCWPV00000000
SAMEA889272
A217
GCA_001248195.1ScaffoldCWOY00000000
SAMEA889385
A60
GCA_001248135.1ScaffoldCWPM00000000
SAMEA889352
A186
GCA_001247525.1ScaffoldCWSM00000000
SAMEA889163
A346(1)
GCA_001247245.1ScaffoldCWOC00000000
SAMEA889269
4679
GCA_001254255.1ScaffoldCWQD00000000
SAMEA889213
A481
GCA_001254095.1ScaffoldCWSO00000000
SAMEA889198
A325
GCA_001254055.1ScaffoldCWSC00000000
SAMEA889338
A4
GCA_001253835.1ScaffoldCWPI00000000
SAMEA889379
A49
GCA_001253695.1ScaffoldCWSK00000000
SAMEA889253
A31
GCA_001253755.1ScaffoldCWOI00000000
SAMEA889205
VC51
GCA_001253575.1ScaffoldCWNN00000000
SAMEA889228
GP8
GCA_001253555.1ScaffoldCWQC00000000
SAMEA889295
A279
GCA_001253615.1ScaffoldCWPQ00000000
SAMEA889279
A219
GCA_001253495.1ScaffoldCWOV00000000
SAMEA889287
A111
GCA_001253455.1ScaffoldCWPK00000000
SAMEA889265
4122
GCA_001253435.1ScaffoldCWOW00000000
SAMEA889383
A51
GCA_001253315.1ScaffoldCWRA00000000
SAMEA889169
GP140
GCA_001253235.1ScaffoldCWSI00000000
SAMEA889255
A29
GCA_001253295.1ScaffoldCWOK00000000
SAMEA889343
A185
GCA_001253175.1ScaffoldCWOO00000000
SAMEA889344
A184
GCA_001253155.1ScaffoldCWNX00000000
SAMEA889310
A154
GCA_001253055.1ScaffoldCWRW00000000
SAMEA889182
4600
GCA_001253035.1ScaffoldCWRJ00000000
SAMEA889324
1346
GCA_001252855.1ScaffoldCWOZ00000000
SAMEA889375
4111
GCA_001252895.1ScaffoldCWRS00000000
SAMEA889178
4585
GCA_001252875.1ScaffoldCWOB00000000
SAMEA889347
A152
GCA_001252775.1ScaffoldCWRD00000000
SAMEA889236
6215
GCA_001252675.1ScaffoldCWNT00000000
SAMEA889204
V5
GCA_001252495.1ScaffoldCWSJ00000000
SAMEA889329
A18
GCA_001252195.1ScaffoldCWSR00000000
SAMEA889240
6196
GCA_001252075.1ScaffoldCWRP00000000
SAMEA889305
4121
GCA_001252055.1ScaffoldCWRK00000000
SAMEA889191
4551
GCA_001251975.1ScaffoldCWQV00000000
SAMEA889354
6212
GCA_001250455.1ScaffoldCWNM00000000
SAMEA889159
A32
GCA_001250435.1ScaffoldCWPE00000000
SAMEA889369
4642
GCA_001250035.1ScaffoldCWQL00000000
SAMEA889171
GP145
GCA_001250615.1ScaffoldCWOA00000000
SAMEA889229
A488(2)
GCA_001249815.1ScaffoldCWNO00000000
SAMEA889152
7682
GCA_001249795.1ScaffoldCWPF00000000
SAMEA889288
4672
GCA_001249715.1ScaffoldCWQK00000000
SAMEA889174
GP152
GCA_001249515.1ScaffoldCWQQ00000000
SAMEA889210
6191
GCA_001250195.1ScaffoldCWNZ00000000
SAMEA889230
MJ1485
GCA_001249995.1ScaffoldCWNQ00000000
SAMEA889312
A177
GCA_001251155.1ScaffoldCWNY00000000
SAMEA889345
A130
GCA_001250935.1ScaffoldCWOS00000000
SAMEA889386
A61
GCA_001250795.1ScaffoldCWNW00000000
SAMEA889362
MBN17
GCA_001251435.1ScaffoldCWRG00000000
SAMEA889227
7687
GCA_001251495.1ScaffoldCWQE00000000
SAMEA889202
GP16
GCA_001251475.1ScaffoldCWQR00000000
SAMEA889239
6195
GCA_001251415.1ScaffoldCWQX00000000
SAMEA889266
A487(2)
GCA_001251595.1ScaffoldCWQA00000000
SAMEA889267
A483
GCA_001251935.1ScaffoldCWQW00000000
SAMEA889238
6194
GCA_001254655.1ScaffoldCWSF00000000
SAMEA889335
A10
GCA_001254635.1ScaffoldCWRM00000000
SAMEA889188
4623
GCA_001254735.1ScaffoldCWPB00000000
SAMEA889382
A50
GCA_001254675.1ScaffoldCWSE00000000
SAMEA889337
A5
GCA_001254855.1ScaffoldCWRE00000000
SAMEA889168
GP106
GCA_001254815.1ScaffoldCWPC00000000
SAMEA889366
4675
GCA_001254535.1ScaffoldCWOG00000000
SAMEA889381
A59
GCA_001254575.1ScaffoldCWOP00000000
SAMEA889342
A103
GCA_001254395.1ScaffoldCWQJ00000000
SAMEA889218
A325
GCA_001254435.1ScaffoldCWSB00000000
SAMEA889331
GP160
GCA_001254335.1ScaffoldCWRV00000000
SAMEA889185
4784
GCA_001254355.1ScaffoldCWSQ00000000
SAMEA889224
MG116226
GCA_001255295.1ScaffoldCWPW00000000
SAMEA889302
A200
GCA_001255155.1ScaffoldCWNL00000000
SAMEA889372
A22
GCA_001254955.1ScaffoldCWRB00000000
SAMEA889241
6197
GCA_001254915.1ScaffoldCWOR00000000
SAMEA889313
A180
GCA_001254895.1ScaffoldCWNS00000000
SAMEA889199
MG116025
GCA_001255835.1ScaffoldCWSA00000000
SAMEA889392
4536
GCA_001255915.1ScaffoldCWRI00000000
SAMEA889156
7685
GCA_001256015.1ScaffoldCWOD00000000
SAMEA889268
4663
GCA_001255575.1ScaffoldCWSG00000000
SAMEA889336
A6
GCA_001256655.1ScaffoldCWPU00000000
SAMEA889275
A209
GCA_001256695.1ScaffoldCWPL00000000
SAMEA889314
4660
GCA_001256675.1ScaffoldCWPX00000000
SAMEA889309
A241
GCA_001256355.1ScaffoldCWQI00000000
SAMEA889173
PRL5
GCA_001257075.1ScaffoldCWSN00000000
SAMEA889164
A488(1)
GCA_001257255.1ScaffoldCWOJ00000000
SAMEA889203
V109
GCA_001257215.1ScaffoldCWNU00000000
SAMEA889232
A330
GCA_001257035.1ScaffoldCWOT00000000
SAMEA889374
4110
GCA_001256975.1ScaffoldCWPO00000000
SAMEA889367
A232
GCA_001256835.1ScaffoldCWPP00000000
SAMEA889278
A231
GCA_001257835.1ScaffoldCWQZ00000000
SAMEA889237
6193
GCA_001257975.1ScaffoldCWNP00000000
SAMEA889233
A383
GCA_001257895.1ScaffoldCWRL00000000
SAMEA889226
4593
GCA_001258535.1ScaffoldCWRH00000000
SAMEA889155
7686
GCA_001258555.1ScaffoldCWRU00000000
SAMEA889184
4488
GCA_001258495.1ScaffoldCWOQ00000000
SAMEA889365
4656
GCA_001258975.1ScaffoldCWQY00000000
SAMEA889219
A316
GCA_001258995.1ScaffoldCWRX00000000
SAMEA889183
4646
GCA_001259055.1ScaffoldCWRQ00000000
SAMEA889303
4113
GCA_001260175.1ScaffoldCWRY00000000
SAMEA889176
4662
GCA_001260075.1ScaffoldCWQS00000000
SAMEA889170
GP143
GCA_001260055.1ScaffoldCWPJ00000000
SAMEA889370
4670
GCA_001259715.1ScaffoldCWRO00000000
SAMEA889221
4538
GCA_001259875.1ScaffoldCWPG00000000
SAMEA889293
4661
GCA_001259995.1ScaffoldCWSL00000000
SAMEA889299
A215
GCA_001259935.1ScaffoldCWPD00000000
SAMEA889341
A109
GCA_001259915.1ScaffoldCWOE00000000
SAMEA889311
A155
GCA_001259575.1ScaffoldCWQF00000000
SAMEA889215
A390
GCA_001259555.1ScaffoldCWOH00000000
SAMEA889378
A46
GCA_001259495.1ScaffoldCWOF00000000
SAMEA889377
A76
GCA_001259475.1ScaffoldCWQO00000000
SAMEA889396
6210
GCA_001259795.1ScaffoldCWQH00000000
SAMEA889216
A389
GCA_001259635.1ScaffoldCWNV00000000
SAMEA889339
A68
GCA_001259135.1ScaffoldCWON00000000
SAMEA889371
4605
GCA_001259315.1ScaffoldCWOL00000000
SAMEA889348
A131
GCA_001259235.1ScaffoldCWRT00000000
SAMEA889179
4552
GCA_001260995.1ScaffoldCWSD00000000
SAMEA889373
A27
GCA_001260915.1ScaffoldCWOU00000000
SAMEA889340
A66
GCA_001261275.1ScaffoldCWSS00000000
SAMEA889211
6180
GCA_001261095.1ScaffoldCWPZ00000000
SAMEA889212
A482
GCA_001261075.1ScaffoldCWQM00000000
SAMEA889195
PRL64
GCA_001261135.1ScaffoldCWPY00000000
SAMEA889277
A245
GCA_001260695.1ScaffoldCWRF00000000
SAMEA889151
7684
GCA_001260295.1ScaffoldCWRR00000000
SAMEA889333
1362
GCA_001260335.1ScaffoldCWRN00000000
SAMEA889304
4339
GCA_001261535.1ScaffoldCWSP00000000
SAMEA889197
A487(1)
GCA_001261515.1ScaffoldCWPT00000000
SAMEA889403
A201
GCA_001261555.1ScaffoldCWQP00000000
SAMEA889242
6201
GCA_001261335.1ScaffoldCWQU00000000
SAMEA889201
GP60
SRA Data Details
ParameterValue
Data volume, Gbases1,029
Data volume, Tbytes0.54

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