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Accession: PRJEB2035 ID: 203744

C trachomatis

Chlamydia trachomatis global diversity project

Chlamydia trachomatis is the most common cause of sexually transmitted infections in the UK, a statistic which is also reflected globally. More...
AccessionPRJEB2035
Data TypeGenome sequencing and assembly
ScopeMonoisolate
Publications (total 3)
  • Andersson P et al., "Chlamydia trachomatis from Australian Aboriginal people with trachoma are polyphyletic composed of multiple distinctive lineages.", Nat Commun, 2016 Feb 25;7:10688
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SubmissionRegistration date: 21-May-2013
SC
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)35434
WGS master26
SRA Experiments633
Protein Sequences58848
Publications
PubMed3
PMC3
Other datasets
BioSample615
Assembly26
Assembly details:
Assembly levelNumber of Assemblies
21
5
26
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_001047735.1ScaffoldCVPJ00000000SAMEA1483360
H34IMS
GCA_001398115.1ScaffoldCVNU00000000SAMEA1398231
R36176extract
GCA_001398095.1ScaffoldCVNZ00000000SAMEA1398230
H17IMS
GCA_001398155.1ContigCVNQ00000000SAMEA1398260
R26833extract
GCA_001398135.1ScaffoldCVNT00000000SAMEA1398254
R27091extract
GCA_001398195.1ContigCVNY00000000SAMEA1398271
H21IMS
GCA_001398175.1ScaffoldCVNS00000000SAMEA1398265
R28017extract
GCA_001398415.1ScaffoldCVOD00000000SAMEA1483370
H29IMS
GCA_001398395.1ScaffoldCVOC00000000SAMEA1483369
H27IMS
GCA_001398375.1ScaffoldCVOA00000000SAMEA1483364
H1IMS
GCA_001398355.1ScaffoldCVOE00000000SAMEA1483348
H31IMS
GCA_001398335.1ScaffoldCVNO00000000SAMEA1398413
R33512IMS
GCA_001398315.1ScaffoldCVNN00000000SAMEA1398401
R3059IMS
GCA_001398295.1ScaffoldCVNP00000000SAMEA1398397
R4175IMS
GCA_001398275.1ScaffoldCVNW00000000SAMEA1398387
R33512extract
GCA_001398255.1ScaffoldCVNX00000000SAMEA1398375
R4175extract
GCA_001398235.1ScaffoldCVNV00000000SAMEA1398367
R3059extract
GCA_001398215.1ContigCVNR00000000SAMEA1398303
R32100extract
GCA_001317845.1ScaffoldCVNK00000000SAMEA1398364
R26833IMS
GCA_001317825.1ContigCVNI00000000SAMEA1398340
R32100IMS
GCA_001317805.1ScaffoldCVNL00000000SAMEA1398291
R27091IMS
GCA_001317785.1ScaffoldCVNJ00000000SAMEA1398275
R28017IMS
GCA_001317765.1ScaffoldCVNM00000000SAMEA1398206
R36176IMS
GCA_001317745.1ContigCVNC00000000SAMEA1008240
LGV913
GCA_001317725.1ScaffoldCVNB00000000SAMEA1008224
LGV98
GCA_001317705.1ScaffoldCVND00000000SAMEA1008223
LGV1339
SRA Data Details
ParameterValue
Data volume, Gbases488
Data volume, Tbytes0.32

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    Chlamydia trachomatis global diversity project
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