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Accession: PRJDB5287 ID: 381305

The interaction of three players in an experimental lichen model Usnea hakonensis.

The fungal (Usnea hakonensis), algal (Trebouxia sp.), and bacterial (Sphingomonas sp. More...

Accession	PRJDB5287
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications (total 3) Less...	Kono M et al., "In vitro resynthesis of lichenization reveals the genetic background of symbiosis-specific fungal-algal interaction in Usnea hakonensis.", BMC Genomics, 2020 Sep 29;21(1):671 More... Kono M et al., "In vitro resynthesis of lichenization reveals the genetic background of symbiosis-specific fungal-algal interaction in Usnea hakonensis.", BMC Genomics, 2020 Sep 29;21(1):671 Kono M et al., "Physical contact and carbon transfer between a lichen-forming Trebouxia alga and a novel Alphaproteobacterium.", Microbiology (Reading), 2017 May;163(5):678-691 Published online: Kono M et al., "In vitro resynthesis of lichenization reveals the genetic background of symbiosis-specific fungal-algal interaction in Usnea hakonensis.", 2020; Less...
Submission	Registration date: 31-Mar-2017 Swedish Museum of Natural History

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	1221
WGS master	3
SRA Experiments	23
Publications
PubMed	2
PMC	1
Other datasets
BioSample	25
Assembly	3

Assembly details:

Assembly level

Number of Assemblies

Scaffold

3
3

Assembly	Level	WGS	BioSample	Strain	Taxonomy
GCA_002117915.1		BDJB00000000	SAMD00066625	TZW2008	Sphingomonas sp. TZW2008
GCA_002118135.1		BDIU00000000	SAMD00066476	TZW2008	Trebouxia sp. TZW2008
GCA_013423325.1		BLJB00000000	SAMD00191533	-	Usnea hakonensis

SRA Data Details

Parameter	Value
Data volume, Gbases	201
Data volume, Mbytes	91540

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WGS master
Link to WGS master record(s)

LinkOut to external resources

GOLD: Gp0235284 [Genomes On Line Database]
GOLD: Gp0235284
Genomes On Line Database
2922453664: Sphingomonas sp. TZW2008 [Integrated Microbial Genomes]
2922453664: Sphingomonas sp. TZW2008
Integrated Microbial Genomes

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