Kazusa Genome Project (ID 1252443) - BioProject

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Accession: PRJDB20515 ID: 1252443

Kazusa Genome Project (green plants)

Kazusa Genome Project: genome sequencing and assembly of Viridiplantae

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This project is a component of the Earth BioGenome Project (EBP)

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55 additional projects are components of the Earth BioGenome Project (EBP).

Kazusa Genome Project aims to reconstruct plant classification systems by comparing genome structures. As a first step, we are sequencing the genomes of unexplored orders of angiosperms. To achieve telomere-to-telomere (T2T) level assemblies, we are actively using advanced technologies such as high-throughput chromatin conformation capture and targeted sequencing of previously uncharacterized genomic regions. We are also developing user-friendly plant genome databases to improve data accessibility for a wide range of users. In parallel, we promote the industrial application of genomic technologies and engage in outreach activities to enhance public understanding of our research.

Accession	PRJDB20515
Type	Umbrella project
Organism	Viridiplantae[Taxonomy ID: 33090] Eukaryota; Viridiplantae
Publications	Published online: Kole C et al., "Chromosome-level <i>de novo</i> genome assemblies of over 100 plant species", Breeding Science, 2021;71(2):117-124 Published online: Aoyagi Blue Y et al., "The impact of telomere-to-telomere genome assembly in the plant pan-genomics era", Breeding Science, 2025;75(1):3-12
Submission	Registration date: 17-Apr-2025 Kazusa DNA Research Institute
Related Resources	Kazusa Genome Atlas

Project Data:

Resource Name	Number of Links
Publications
PubMed	97
PMC	55
Other datasets
Assembly	111

SRA Data Details

Parameter	Value
Data volume, Gbases	36,661
Data volume, Tbytes	21.65

Kazusa Genome Project encompasses the following 86 sub-projects:

Project Type

Number of Projects

Genome sequencing

Highest level of assembly :

Complete genome
Chromosomes
Scaffolds
Contigs
SRA or Trace
Total

6
13
32
17
5
73

BioProject accession	Assembly level	Name	Title
PRJNA881799	SRA or Trace	A multi-omic Nicotiana benthamiana resource for fundamental research and biotechnology	A multi-omic Nicotiana benthamiana resource for fundamental research and biotechnology (N. Benthamiana)
PRJNA13190	Chromosomes	Arabidopsis thaliana	Arabidopsis thaliana legacy genome sequence (Arabidopsis Genome Initiative)
PRJNA258023	Chromosomes	Arachis duranensis	Arachis duranensis cultivar:V14167 Genome sequencing and assembly (The International Peanut...)
PRJNA419393	Chromosomes	Arachis hypogaea	Arachis hypogaea cultivar:Tifrunner Genome sequencing and assembly (International Peanut Genome...)
PRJNA258025	Chromosomes	Arachis ipaensis	Arachis ipaensis cultivar:K30076 Genome sequencing and assembly (The International Peanut...)

List all 73 'Genome sequencing' projects...

BioProject accession	Assembly level	Name	Title
PRJNA881799	SRA or Trace	A multi-omic Nicotiana benthamiana resource for fundamental research and biotechnology	A multi-omic Nicotiana benthamiana resource for fundamental research and biotechnology (N. Benthamiana)
PRJNA13190	Chromosomes	Arabidopsis thaliana	Arabidopsis thaliana legacy genome sequence (Arabidopsis Genome Initiative)
PRJNA258023	Chromosomes	Arachis duranensis	Arachis duranensis cultivar:V14167 Genome sequencing and assembly (The International Peanut...)
PRJNA419393	Chromosomes	Arachis hypogaea	Arachis hypogaea cultivar:Tifrunner Genome sequencing and assembly (International Peanut Genome...)
PRJNA258025	Chromosomes	Arachis ipaensis	Arachis ipaensis cultivar:K30076 Genome sequencing and assembly (The International Peanut...)
PRJNA17	Complete genome	Bradyrhizobium diazoefficiens USDA 110	Nitrogen-fixing plant symbiont (Kazusa)
PRJNA59981	Chromosomes	Brassica rapa	Brassica rapa Chiifu-401-42 genome sequencing project (Brassica rapa genome sequencing...)
PRJDB14137	Scaffolds	Capsicum annuum	Chromosome-level genome assembly of Capsicum annuum, Takanotsume (Kazusa DNA Research Institute)
PRJDB11900	Contigs	Castanea crenata	Genomes of Castanea crenata (Kazusa DNA Research Institute)
PRJDB4656	Scaffolds	Chenopodium quinoa	Whole-genome sequencing data of Chenopodium quinoa (Kazusa DNA Research Institute)
PRJDB18071	Scaffolds	Chenopodium quinoa	whole genome sequencing data of Chenopodium quinoa (Biotech. team Biological...)
PRJDB5536	Scaffolds	Chrysanthemum seticuspe	Whole-genome sequencing data of Chrysanthemum seticuspe (Kazusa DNA Research Institute)
PRJDB7468	Scaffolds	Chrysanthemum seticuspe	Whole genome sequencing of Chrysanthemum model strain Gojo-0 (Hiroshima University)
PRJDB1491	Scaffolds	Dianthus caryophyllus	Carnation whole-genome sequencing (Kazusa DNA Research Institute)
PRJDB14984	Contigs	Diospyros kaki	Chromosome-scale genome assembly of hexaploid monoecious persimmon (Diospyros kaki). (Kazusa DNA Research Institute)
PRJDB6364	Contigs	Diospyros lotus	Whole-genome sequencing data of Diospyros lotus (Kazusa DNA Research Institute)
PRJDB14855	Scaffolds	Echinochloa phyllopogon	Whole genome sequence of Echinochloa phyllopogon, R511 strain (Plant genome and genetics,...)
PRJDB6318	Scaffolds	Eschscholzia californica subsp. californica	Whole-genome sequencing of Eschscholzia californica and gene network analysis (Kazusa DNA Research Institute)
PRJDA71141	Contigs	Eucalyptus camaldulensis	Eucalyptus camaldulensis genome sequencing project (Kazusa DNA Research Institute)
PRJDB4232	Scaffolds	Fagopyrum esculentum	Whole-genome sequencing data of Fagopyrum esculentum (Kazusa DNA Research Institute)
PRJDB15031	Scaffolds	Fagopyrum esculentum	Genome sequencing of Fagopyrum esculentum (Lab. of Plant Genome Informatics,...)
PRJDB15175	Scaffolds	Fagopyrum homotropicum	Genome sequencing of Fagopyrum homotropicum (Lab. of Plant Genome Informatics,...)
PRJDB9879	Chromosomes	Felis catus	Genome sequencing project of American Shorthair cat (NIG)
PRJDB4615	Scaffolds	Ficus carica	RNA-seq of fig leaves and stems, expression analysis (Fruit Tree Team, Fukuoka...)
PRJDB16406	Chromosomes	Ficus carica	Whole genome resequencing analysis of Ficus carica and its relatives (Kazusa DNA Research Institute)
PRJDB8644	Contigs	Ficus erecta	The Ficus erecta genome (Kazusa DNA Research Institute)
PRJDB7670	Scaffolds	Fragaria x ananassa	Whole genome sequencing of the strawberry genome (Kazusa DNA Research Institute)
PRJNA9606	Complete genome	Gloeobacter violaceus PCC 7421	One of the earliest diverged cyanobacteria (Kazusa)
PRJNA486704	Chromosomes	Glycine soja	Genome sequencing and de novo assembly of Glycine soja W05 (The Chinese University of...)
PRJDB14223	Scaffolds	Glycyrrhiza uralensis	Genome sequencing of Glycyrrhiza uralensis (Kazusa DNA Research Institute)
PRJDB14817	SRA or Trace	Ipomoea	De Novo genome assembly of Ipomoea batatas and Ipomoea trifida (TRAS sweetpotato genome sequencing...)
PRJDB3230	Scaffolds	Ipomoea trifida	Whole-genome sequencing of Ipomoea trifida (Kazusa DNA Research Institute)
PRJDA52543	Scaffolds	Jatropha curcas	Jatropha curcas Palawan Genome sequencing project (Kazusa DNA Research Institute)
PRJDB718	Scaffolds	Klebsormidium nitens	genome sequence project of a filamentous terrestrial alga Klebsormidium nitens NIES-2285 (NIES-2285 strain was taxonomically reclassified from K. flaccidum) (Tokyo Institute of Technology,...)
PRJDB10540	Contigs	Lathyrus oleraceus	De novo genome assembly of pea JI128 (Kazusa DNA Research Institute)
PRJDA28941	Contigs	Lotus japonicus	Genome sequencing project (Kazusa DNA Research Institute)
PRJDB13731	Contigs	Lyophyllum shimeji	Whole genome sequencing of Lyophyllum shimeji AT787 (National Institute for Basic...)
PRJDB5374	Scaffolds	Macrotyloma uniflorum	Whole-genome sequencing data of Macrotyloma uniflorum (Kazusa DNA Research Institute)
PRJDB18209	Chromosomes	Malpighia emarginata	The acerola genome (Kazusa DNA Research Institute)
PRJDB35718	SRA or Trace	Marcus-kochia littorea	Chromosome-scale genome assembly of Malcolmia littorea (Kazusa DNA Research Institute)
PRJDB9394	Contigs	Meloidogyne incognita	The genome of Meloidogyne incognita (Kazusa DNA Research Institute)
PRJNA18	Complete genome	Mesorhizobium japonicum MAFF 303099	Symbiotic nitrogen-fixing bacteria (Kazusa)
PRJDB13789	SRA or Trace	Nicotiana benthamiana	Whole genome sequence of Nicotiana benthamiana, Nb Nagoya strain (Kazusa DNA Research Institute)
PRJNA244	Complete genome	Nostoc sp. PCC 7120 = FACHB-418	Nitrogen-fixing cyanobacteria that also produce a variety of cyanotoxins (Kazusa)
PRJDB8685	Scaffolds	Ophiorrhiza pumila	Genome sequencing of Ophiorrhiza pumila (Kazusa DNA Research Institute)
PRJDB14450	Contigs	Pinopsida	Haplotype-resolved de novo genome assemblies in four gymnosperm timber trees. (Kazusa DNA Research Institute)
PRJDB7997	Contigs	Prunus	Phased genome sequence of an interspecific hybrid flowering cherry, Somei-Yoshino (Kazusa DNA Research Institute)
PRJDB4877	Scaffolds	Prunus avium	Whole-genome sequencing data of Prunus avium (Kazusa DNA Research Institute)
PRJDB12110	Contigs	Prunus kanzakura	Genomes of early-blooming varieties of flowering cherry (Kazusa DNA Research Institute)
PRJDB10856	Contigs	Pyrus pyrifolia	The genome of Japanese pear 'Nijisseiki' (Kazusa DNA Research Institute)
PRJDB1517	Scaffolds	Raphanus sativus	Radish whole-genome sequencing (Kazusa DNA Research Institute)
PRJDB9233	Contigs	Raphanus sativus	The genome of radish 'Okute-Sakurajima' (Kazusa DNA Research Institute)
PRJDB11740	Scaffolds	Rhododendron	Genomes of Rhododendron ripense and Rhododendron kiyosumense (Kazusa DNA Research Institute)
PRJDB4738	Scaffolds	Rosa multiflora	Whole-genome sequencing data of Rosa multiflora (Kazusa DNA Research Institute)
PRJDB10420	Contigs	Solanum	Genome seqeunces of tomato wild ancestors (Kazusa DNA Research Institute)
PRJDB19708	Chromosomes	Solanum cheesmaniae	Chromosome-scale genome assembly of Solanum cheesmaniae, LA0166 (Kazusa DNA Research Institute)
PRJNA119	Chromosomes	Solanum lycopersicum	Sequencing of the tomato genome by the international consortium (Solanaceae Genomics Project)
PRJDB6546	Scaffolds	Solanum lycopersicum	Whole-genome sequencing data of Solanum lycopersicum Micro-Tom S9 (Kazusa DNA Research Institute)
PRJDB16644	Chromosomes	Solanum lycopersicum	Chromosome-scale genome assembly of Micro-Tom (Kazusa DNA Research Institute)
PRJDB1505	Scaffolds	Solanum melongena	Eggplant whole-genome sequencing (Kazusa DNA Research Institute)
PRJDB10697	Scaffolds	Spinacia oleracea	Genome sequencing of Spinacia oleracea (Kazusa DNA Research Institute)
PRJDB15710	Scaffolds	Streptocarpus ionanthus	Genome sequencing of Saintpaulia ionantha cv. Kilauea (Lab. of Plant Genome Informatics,...)
PRJNA60	Complete genome	Synechocystis sp. PCC 6803	Model cyanobacterium for analysis of photosynthetic organisms (Kazusa)
PRJNA308	Complete genome	Thermosynechococcus vestitus BP-1	Thermophilic cyanobacterium that contains an unusual number of type II introns (Kazusa)
PRJDB13842	Chromosomes	Tricholoma matsutake	Telomere-to-telomere genome assembly of matsutake mushroom (Tricholoma matsutake) (Kazusa DNA Research Institute)
PRJDB18306	Scaffolds	Trifolium alexandrinum	Genome sequencing of Egyptian clover, Trifolium alexandrinum (Kazusa DNA Research Institute)
PRJDB2012	Scaffolds	Trifolium subterraneum	Genome sequencing data for Trifolium subterraneum (Lab. of Plant Genome Informatics,...)
PRJDB7187	SRA or Trace	Trifolium subterraneum	Genome assembly and gene prediction in sub clover (Kazusa DNA Research Institute)
PRJDB11116	Contigs	Turritopsis dohrnii	Genome sequencing of Turritopsis dohrnii (Kazusa DNA Research Institute)
PRJDB17190	Contigs	Veronica peregrina	The Veronica peregrina genome (Kazusa DNA Research Institute)
PRJDB4438	Scaffolds	Vicia sativa	Whole-genome sequencing data for Vicia sativa (Kazusa DNA Research Institute)
PRJDB8610	Scaffolds	Vitis x labruscana x Vitis vinifera	Genome sequence of table grape, 'Shine Muscat' (Kazusa DNA Research Institute)
PRJDB4210	Scaffolds	Zoysia	Whole-genome sequencing of Zoysia (Lab. of Plant Genomics and...)

Less...

Other

BioProject accession	Organism	Title
PRJDB12119	Eustoma russellianum	De novo genome assembly of Eustoma grandiflorum, 10B-620 (Kazusa DNA Research Institute)
PRJDB16402	Silene	Rapid and dynamic evolution of a giant Y chromosome in Silene latifolia (Okayama University)

Phenotype or Genotype

BioProject accession	Organism	Title
PRJDA27835	Microcystis aeruginosa NIES-843	Toxic, bloom-forming cyanobacterium (Kazusa DNA Research Institute)

Umbrella project

BioProject accession	Organism	Title
PRJDB13920	Actinidia	De novo genome assemblies of three Actinidia species (Kazusa DNA Research Institute)
PRJDB12289	Ananas comosus	Genome assembly for a pineapple cultivar, 'Yugafu' (Kazusa DNA Research Institute)
PRJDB12632	Asparagus kiusianus	Genome assemblies for Asparagus kiusianus (Kazusa DNA Research Institute)
PRJDB16041	Citrus	De Novo genome assembly of Citrus unshiu, C. Kinokuni and C. nobilis Lour. var. kunep Tanaka (Kazusa DNA Research Institute)
PRJDB16359	Citrus	De Novo genome assembly of Citrus unshiu, C. Kinokuni and C. nobilis Lour. var. kunep Tanaka (Kazusa DNA Research Institute)

List all 10 'Umbrella project' projects...

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Kazusa Genome Project (green plants)

Kazusa Genome Project: genome sequencing and assembly of Viridiplantae

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