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Accession: PRJDA39809 ID: 39809

Oryza sativa Japonica Group strain:Koshihikari (Japanese rice)

Oryza sativa Japonica group genome sequencing project by QTL Genomics Research Center, Japan

See Genome Information for Oryza sativa
Oryza sativa has important syntenic relationships with the other cereal species and is a model plant for the grasses.
AccessionPRJDA39809
Data TypeGenome sequencing and assembly
ScopeMonoisolate
OrganismOryza sativa Japonica Group[Taxonomy ID: 39947]
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; Oryza sativa Japonica Group
PublicationsYamamoto T et al., "Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms.", BMC Genomics, 2010 Apr 27;11:267
SubmissionRegistration date: 7-Apr-2010
QTL Genomics Research Center, National Institute of Agrobiological Sciences
Locus Tag PrefixCMO
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)13
WGS master1
SRA Experiments1
Publications
PubMed1
PMC1
Other datasets
BioSample1
Assembly1
SRA Data Details
ParameterValue
Data volume, Gbases9
Data volume, Mbytes5412

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