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Accession: PRJNA302314 ID: 302314

Zingiberales

Multiplexed exon capture in the Zingiberales including sampling from each of the 8 families enriched on a single microarray

The complete genome of Musa acuminata and transcriptome information from each of the other seven families of Zingiberales were used to design a set of nuclear loci that can be enriched from highly divergent taxa with a single array-based capture of indexed genomic DNA. More...
AccessionPRJNA302314
Data TypeTargeted Locus (Loci)
ScopeMultispecies
Publications
  • Givnish TJ et al., "Monocot plastid phylogenomics, timeline, net rates of species diversification, the power of multi-gene analyses, and a functional model for the origin of monocots.", Am J Bot, 2018 Nov;105(11):1888-1910
  • Sass C et al., "Revisiting the Zingiberales: using multiplexed exon capture to resolve ancient and recent phylogenetic splits in a charismatic plant lineage.", PeerJ, 2016;4:e1584
Grants
  • DEB 1257701, National Science Foundation
  • DEB 0816661, National Science Foundation
  • "Genome Sequencer FLX" (Grant ID S10 RR029668, National Center for Research Resources)
  • "Illumina Sequencer to Facilitate Functional Genomics at Berkeley" (Grant ID S10 RR027303, National Center for Research Resources)
SubmissionRegistration date: 16-Nov-2015
University of California, Berkeley
RelevanceEvolution
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (Genomic DNA)53
SRA Experiments106
Protein Sequences3886
Publications
PubMed2
PMC1
Other datasets
BioSample53
PopSet1
SRA Data Details
ParameterValue
Data volume, Gbases43
Data volume, Mbytes28328

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