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Accession: PRJNA625082 ID: 625082

human oral metagenome

human oral microbiome, metagenomic assembly

We investigated phylogenetic and functional markers of niche partitioning of enigmatic members of the oral cavity, with a focus on members of the candidate phylum TM7. More...
AccessionPRJNA625082
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismhuman oral metagenome[Taxonomy ID: 447426]
unclassified sequences; metagenomes; organismal metagenomes; human oral metagenome
Grants
  • "Frank R. Lillie Research Innovation Award" (Grant ID none, University of Chicago)
  • "Gastro-Intestinal Research Foundation" (Grant ID none, University of Chicago)
  • "Mutchnik Family Fund" (Grant ID none, University of Chicago)
  • "A FOUNDATION FOR THE ORAL MICROBIOME AND METAGENOME" (Grant ID DE016937, National Institutes of Health)
  • "SPATIAL ORGANIZATION OF THE ORAL MICROBIOME" (Grant ID DE022586, National Institutes of Health)
  • "CULTIVATION, NATURE, ECOLOGY AND PATHOGENICITY OF THE UNCULTIVABLE ORAL MICROBIOME" (Grant ID DE024468, National Institutes of Health)
  • "STATISTICAL METHODS TO ENHANCE REPRODUCIBLE MICROBIOME DISCOVERY" (Grant ID R35GM133420, National Institutes of Health)
  • "Vetlesen Foundation grant to the MBL" (Grant ID none, G. Unger Vetlesen Foundation)
  • "Functional potential of the uncultivated Candidate Phylum OP9 from deep Antarctic marine sediments using single cell genome techniques" (Grant ID DE-AC02-05CH11231, Department of Energy)
SubmissionRegistration date: 11-Jun-2020
Marine Biological Laboratory
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)50
SRA Experiments146
Other datasets
BioSample138
Assembly50
Assembly details:
Assembly levelNumber of Assemblies
50
50
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_013333195.2ContigJABCPG000000000SAMN14602670
T-B-M_MAG_00007
GCA_013333835.2ContigJABCOB000000000SAMN14602639
P-A-M_MAG_00010
GCA_013333165.2ContigJABCPL000000000SAMN14602675
T-C-F_MAG_00010
GCA_013333755.2ContigJABCOD000000000SAMN14602641
P-B-F_MAG_00016
GCA_013332525.2ContigJABCOP000000000SAMN14602653
P-C-F_MAG_00005
GCA_013333815.2ContigJABCOC000000000SAMN14602640
P-B-F_MAG_00010
GCA_013333765.2ContigJABCOG000000000SAMN14602644
P-B-F_MAG_00026
GCA_013333795.2ContigJABCOE000000000SAMN14602642
P-B-F_MAG_00020
GCA_013333695.2ContigJABCOH000000000SAMN14602645
P-B-F_MAG_00030
GCA_013333625.2ContigJABCOL000000000SAMN14602649
P-B-M_MAG_00013
GCA_013333645.2ContigJABCOK000000000SAMN14602648
P-B-M_MAG_00010
GCA_013333675.2ContigJABCOJ000000000SAMN14602647
P-B-M_MAG_00009
GCA_013333155.2ContigJABCPK000000000SAMN14602674
T-C-F_MAG_00008
GCA_013333135.2ContigJABCPJ000000000SAMN14602673
T-B-M_MAG_00012
GCA_013332965.2ContigJABCPR000000000SAMN14602681
T-D-F_MAG_00008
GCA_013333205.2ContigJABCPI000000000SAMN14602672
T-B-M_MAG_00011
GCA_013333415.2ContigJABCOW000000000SAMN14602660
T-A-F_MAG_00011
GCA_013333375.2ContigJABCOY000000000SAMN14602662
T-A-F_MAG_00015
GCA_013333405.2ContigJABCOZ000000000SAMN14602663
T-A-F_MAG_00016
GCA_013332955.2ContigJABCPS000000000SAMN14602682
T-D-F_MAG_00010
GCA_013333495.2ContigJABCOR000000000SAMN14602655
P-C-M_MAG_00011
GCA_013333515.2ContigJABCOQ000000000SAMN14602654
P-C-M_MAG_00010
GCA_013333845.2ContigJABCNZ000000000SAMN14602637
P-A-F_MAG_00015
GCA_013333485.2ContigJABCOS000000000SAMN14602656
P-C-M_MAG_00013
GCA_013333595.2ContigJABCON000000000SAMN14602651
P-C-F_MAG_00002
GCA_013333575.2ContigJABCOO000000000SAMN14602652
P-C-F_MAG_00004
GCA_013333055.2ContigJABCPP000000000SAMN14602679
T-C-M_MAG_00008
GCA_013333705.2ContigJABCOI000000000SAMN14602646
P-B-M_MAG_00008
GCA_013333305.2ContigJABCPC000000000SAMN14602666
T-B-F_MAG_00002
GCA_013333355.2ContigJABCPA000000000SAMN14602664
T-A-M_MAG_00008
GCA_013333275.2ContigJABCPB000000000SAMN14602665
T-A-M_MAG_00009
GCA_013333035.2ContigJABCPQ000000000SAMN14602680
T-D-F_MAG_00006
GCA_013333105.2ContigJABCPO000000000SAMN14602678
T-C-M_MAG_00006
GCA_013333395.2ContigJABCOX000000000SAMN14602661
T-A-F_MAG_00012
GCA_013333505.2ContigJABCOT000000000SAMN14602657
T-A-F_MAG_00001
GCA_013333875.2ContigJABCOA000000000SAMN14602638
P-A-M_MAG_00002
GCA_013333255.2ContigJABCPE000000000SAMN14602668
T-B-M_MAG_00001
GCA_013333235.2ContigJABCPH000000000SAMN14602671
T-B-M_MAG_00008
GCA_013333425.2ContigJABCOV000000000SAMN14602659
T-A-F_MAG_00009
GCA_013333095.2ContigJABCPM000000000SAMN14602676
T-C-M_MAG_00002
GCA_013333075.2ContigJABCPN000000000SAMN14602677
T-C-M_MAG_00003
GCA_013333285.2ContigJABCPF000000000SAMN14602669
T-B-M_MAG_00006
GCA_013333475.2ContigJABCOU000000000SAMN14602658
T-A-F_MAG_00002
GCA_013333935.1ContigJABCNV000000000SAMN14602633
P-A-F_MAG_00002
GCA_013333945.2ContigJABCNW000000000SAMN14602634
P-A-F_MAG_00008
GCA_013333895.2ContigJABCNY000000000SAMN14602636
P-A-F_MAG_00013
GCA_013333735.2ContigJABCOF000000000SAMN14602643
P-B-F_MAG_00022
GCA_013333295.2ContigJABCPD000000000SAMN14602667
T-B-F_MAG_00004
GCA_013333915.2ContigJABCNX000000000SAMN14602635
P-A-F_MAG_00010
GCA_013333605.2ContigJABCOM000000000SAMN14602650
P-B-M_MAG_00018
SRA Data Details
ParameterValue
Data volume, Gbases522
Data volume, Tbytes0.23

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