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Accession: PRJNA637878 ID: 637878

Precise quantification and tracking of gut bacterial strains following fecal transplantation demonstrates long-term stable engraftment and predicts outcome

See Genome Information for Homo sapiens
We isolated bacterial strains from donors who provided their samples for Fecal Transplantation (FMT) to several patients with different diseases. More...
AccessionPRJNA637878
Data TypeGenome sequencing and assembly
ScopeMultispecies
SubmissionRegistration date: 7-Jun-2020
Icahn School of Medicine at Mount Sinai
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)956
SRA Experiments112
Other datasets
BioSample1130
Assembly956
Assembly details:
Assembly levelNumber of Assemblies
895
61
956
AssemblyLevelWGSBioSampleStrainTaxonomy
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1001270H_150608_C8
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1001713B170221_170320_C9
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1001275B_160808_B4
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1001095IJ_161003_B3
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1001270H_150608_D1
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D55t1_190419_D3
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1001175B_160314_A7
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D6t1_180914_F2
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BSD2780061687b_171204_G4
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D59t2_181005_E8
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1001175B_160314_E5
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D53t1_180928_A7
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1001095IJ_161003_C5
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1001099B_141217_C6
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1001175B_160314_C3
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1001271B_151109_A3
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J1101437_171009_F3
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1001285H_161024_D4
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1001095H_141210_E11
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D54t1_190329_B1
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J1101004_170508_F3
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BSD2780120874b_170522_C6
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1001175B_160314_A4
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D55t1_190419_C2
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BSD2780120875b_170604_G9
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1001713B170221_170320_G1
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1001311H_170123_H2
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1001095H_141210_D4
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1001262B_160229_F6
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D59t2_181005_C12
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D55t1_190419_C5
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D53t1_180928_B5
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BSD2780120874b_170522_F3
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D6t1_180914_D10
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D52t1_170925_H1
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D46t1_190503_E1
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1001175B_160314_C12
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1001713B170214_170313_D4
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D41t1_190614_E5
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J1101437_171009_C6
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BSD2780061688_150302_G4
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1001271B_150615_A10
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1001136B_160425_G7
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D54t1_190329_E2
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D40t1_170626_E2
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BSD2780120875_150330_C6
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1001136B_160425_A4
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GCA_015553695.1ScaffoldJADNHD000000000SAMN15532924
BSD2780120874_150323_B10
GCA_015559025.1ScaffoldJADMPB000000000SAMN15532840
D40t1_170626_H2
GCA_015551645.1ScaffoldJADNDC000000000SAMN15533014
D54t1_190329_F1
GCA_015554365.1ScaffoldJADNIK000000000SAMN15533218
D55t1_190419_H1
GCA_015551945.1ScaffoldJADNDO000000000SAMN15532735
J1101004_170508_H5
GCA_015669415.1ScaffoldJADPAD000000000SAMN15532768
BSD2780061687_150420_E11
GCA_015549945.1ScaffoldJADMZU000000000SAMN15532469
1001270H_150608_E10
GCA_015550825.1ScaffoldJADNBM000000000SAMN15532649
1001217B_150727_G3
GCA_015548865.1ScaffoldJADMXW000000000SAMN15533233
1001295B_180824_A7
GCA_015671355.1ScaffoldJADPLN000000000SAMN15532372
D43t1_170807_G4
GCA_015669095.1ScaffoldJADPGW000000000SAMN15532726
1001311B_170327_B2
GCA_015669425.1ScaffoldJADPAF000000000SAMN15532848
J1101653_170612_B8
GCA_015551345.1ScaffoldJADNCQ000000000SAMN15532423
D43t1_170807_H6
GCA_015670055.1ScaffoldJADPBF000000000SAMN15533122
BSD2780120874b_170522_D9
GCA_015548525.1ScaffoldJADMXG000000000SAMN15532389
J1101437_171009_F1
GCA_015548515.1ScaffoldJADMXF000000000SAMN15532911
BSD2780120875_150330_F2
GCA_015556005.1ScaffoldJADNLP000000000SAMN15532719
1001287H_170206_D1
GCA_015547285.1ScaffoldJADMUU000000000SAMN15532498
BSD2780120874b_170522_B1
GCA_015552775.1ContigJADNFL000000000SAMN15532436
1001713B170131_170501_E6
GCA_015669745.1ScaffoldJADPAS000000000SAMN15532861
1001285H_161024_F1
GCA_015671415.1ScaffoldJADPCZ000000000SAMN15532978
1001270H_150608_C6
GCA_015671015.1ScaffoldJADPCR000000000SAMN15532571
1001175B_160314_H11
GCA_015669245.1ScaffoldJADOZV000000000SAMN15532920
D40t1_170626_B7
GCA_015549825.1ScaffoldJADMZP000000000SAMN15532930
1001713B170131_170501_C10
GCA_015553625.1ScaffoldJADNGY000000000SAMN15533130
D40t1_170626_G7
GCA_015560905.1ContigJADMSS000000000SAMN15532807
1001095H_141210_D1
GCA_015559825.1ScaffoldJADMQQ000000000SAMN15532770
D55t1_190419_A7
GCA_015559305.1ScaffoldJADMPR000000000SAMN15533195
1001254J_160919_C10
GCA_015555235.1ScaffoldJADNKA000000000SAMN15532404
D6t1_180914_C10
GCA_015666945.1ScaffoldJADPDF000000000SAMN15532595
BSD2780120874_150323_D6
GCA_015552565.1ScaffoldJADNFA000000000SAMN15532892
D6t1_180914_F1
GCA_015546995.1ScaffoldJADMUH000000000SAMN15532988
D6t1_180914_B1
GCA_015670875.1ScaffoldJADPCN000000000SAMN15533292
D52t1_170925_A12
GCA_015556125.1ScaffoldJADNLU000000000SAMN15533142
1001287H_170206_C7
GCA_015670115.1ScaffoldJADPBH000000000SAMN15533321
1001095IJ_161003_G6
GCA_015670285.1ScaffoldJADPBL000000000SAMN15532872
D40t1_170626_E1
GCA_015669655.1ScaffoldJADPAN000000000SAMN15532791
D53t1_180928_E8
GCA_015668935.1ScaffoldJADOZJ000000000SAMN15533001
1001270H_150608_B10
GCA_015553015.1ScaffoldJADNFW000000000SAMN15533002
J1101437_171009_E6
GCA_015561235.1ScaffoldJADMTC000000000SAMN15532657
1001095IJ_161003_A5
GCA_015548965.1ScaffoldJADMYA000000000SAMN15533234
D6t1_180914_D8
GCA_015550715.1ScaffoldJADNBF000000000SAMN15532640
D53t1_180928_C1
GCA_015552485.1ScaffoldJADNEU000000000SAMN15533253
1001713B170207_170306_F12
GCA_015551785.1ScaffoldJADNDJ000000000SAMN15533119
D6t1_180914_C2
GCA_015546865.1ScaffoldJADMUA000000000SAMN15533206
1001254J_160919_B12
GCA_015560745.1ScaffoldJADMSI000000000SAMN15532487
D53t1_180928_H2
GCA_015559215.1ScaffoldJADMPM000000000SAMN15533302
D43t1_170807_F3
GCA_015555385.1ScaffoldJADNKG000000000SAMN15532564
D53t1_180928_F4
GCA_015556095.1ScaffoldJADNLT000000000SAMN15533141
1001095IJ_161003_H11
GCA_015557775.1ScaffoldJADNOY000000000SAMN15533108
D55t1_190419_F12
GCA_015669175.1ScaffoldJADOZU000000000SAMN15532501
1001283B150304_161114_F10
GCA_015670885.1ScaffoldJADPLU000000000SAMN15532893
1001285H_161024_G5
GCA_015560245.1ScaffoldJADMRL000000000SAMN15532579
1001713B170207_170306_C3
GCA_015559315.1ScaffoldJADMPS000000000SAMN15533194
1001713B170214_170313_A1
GCA_015559905.1ScaffoldJADMQU000000000SAMN15532776
D55t1_190419_H11
GCA_015556225.1ScaffoldJADNLY000000000SAMN15532810
1001713B170131_170501_D3
GCA_015555345.1ScaffoldJADNKH000000000SAMN15532531
D6t1_180914_C4
GCA_015555495.1ScaffoldJADNKM000000000SAMN15532863
D6t1_180914_F9
GCA_015555465.1ScaffoldJADNKO000000000SAMN15532864
1001254J_160919_F11
GCA_015552895.1ScaffoldJADNFO000000000SAMN15532532
D40t1_170626_E6
GCA_015553245.1ScaffoldJADNGE000000000SAMN15532680
1001175B_160314_H3
GCA_015547085.1ContigJADMUM000000000SAMN15532919
1001283B150209_150212_H2
GCA_015551585.1ScaffoldJADNDA000000000SAMN15532541
D53t1_180928_G12
GCA_015550925.1ScaffoldJADNBS000000000SAMN15533060
D53t1_180928_H11
GCA_015550035.1ScaffoldJADMZZ000000000SAMN15532460
D33t1_170424_B11
GCA_015670805.1ScaffoldJADPCL000000000SAMN15533036
D55t1_190419_H2
GCA_015670715.1ScaffoldJADPCF000000000SAMN15533038
D40t1_170626_C11
GCA_015669325.1ScaffoldJADOZZ000000000SAMN15532459
1001095IJ_161003_D10
GCA_015667455.1ScaffoldJADPEB000000000SAMN15532548
1001216B_150713_H8
GCA_015668115.1ScaffoldJADPFA000000000SAMN15532745
D43t1_170807_H4
GCA_015669055.1ScaffoldJADOZM000000000SAMN15533106
1001283B150210_160208_F1
GCA_015556575.1ScaffoldJADNMR000000000SAMN15532968
1001175B_160314_H6
GCA_015552665.1ScaffoldJADNFC000000000SAMN15532844
1001283B150225_161107_H12
GCA_015670395.1ScaffoldJADPBR000000000SAMN15532457
1001302B_160321_G9
GCA_015670235.1ScaffoldJADPBJ000000000SAMN15532526
1001217B_150727_B8
GCA_015560315.1ScaffoldJADMRP000000000SAMN15532894
D55t1_190419_F9
GCA_015560945.1ScaffoldJADMSW000000000SAMN15532801
BSD2780061689_150309_C12
GCA_015670545.1ScaffoldJADPLS000000000SAMN15532608
1001283B150210_160208_E2
GCA_015668915.1ScaffoldJADOZH000000000SAMN15532363
1001262B_160229_D7
GCA_015668895.1ScaffoldJADOZG000000000SAMN15532896
1001283B150225_161107_B8
GCA_015668475.1ScaffoldJADPFQ000000000SAMN15532996
BSD2780120875b_170604_A1
GCA_015667815.1ScaffoldJADPEN000000000SAMN15532953
1001283B150210_160208_G10
GCA_015667665.1ScaffoldJADPLW000000000SAMN15532670
1001283B150217_161031_D1
GCA_015550385.1ScaffoldJADNAQ000000000SAMN15533167
BSD2780120874b_170522_F12
GCA_015549205.1ScaffoldJADMYN000000000SAMN15532822
1001283B150217_161031_H10
GCA_015558265.1ScaffoldJADMNR000000000SAMN15532935
BSD2780120874b_170522_D1
GCA_015555355.1ScaffoldJADNKI000000000SAMN15532566
BSD2780120874b_170522_G1
GCA_015547025.1ScaffoldJADMUI000000000SAMN15532443
1001216B_150713_A10
GCA_015549975.1ScaffoldJADMZX000000000SAMN15532465
1001295B_180824_H5
GCA_015554925.1ScaffoldJADNJL000000000SAMN15532431
1001216B_150713_F11
GCA_015552515.1ScaffoldJADNEX000000000SAMN15634173
1001283B150209_150212_A5
GCA_015551705.1ContigJADNDI000000000SAMN15532748
1001713B170221_170320_B3
GCA_015558475.1ScaffoldJADMOB000000000SAMN15532602
D6t1_180914_E9
GCA_015559665.1ScaffoldJADMQK000000000SAMN15533031
1001287H_170206_A9
GCA_015551765.1ContigJADNDH000000000SAMN15532749
1001271B_151109_F1
GCA_015548055.1ScaffoldJADMWF000000000SAMN15532707
1001271B_151109_G12
GCA_015550395.1ScaffoldJADNAU000000000SAMN15533160
BSD2780061688b_171218_A6
GCA_015550705.1ScaffoldJADNBI000000000SAMN15532643
1001285H_161024_B5
GCA_015550435.1ScaffoldJADNAS000000000SAMN15533165
D40t1_170626_G9
GCA_015549025.1ScaffoldJADMYE000000000SAMN15532620
D43t1_170807_G12
GCA_015547655.1ScaffoldJADMVM000000000SAMN15532413
BSD2780120875b_170604_D12
GCA_015558995.1ScaffoldJADMPA000000000SAMN15533298
1001270B_150601_E4
GCA_015559085.1ScaffoldJADMPE000000000SAMN15532847
BSD2780061688b_171218_G6
GCA_015560355.1ScaffoldJADMRR000000000SAMN15533207
1001285H_161024_D9
GCA_015558605.1ScaffoldJADMOJ000000000SAMN15532940
1001302B_160321_E8
GCA_015553815.1ScaffoldJADNHH000000000SAMN15532450
BSD2780061687b_171204_H4
GCA_015555245.1ScaffoldJADNKD000000000SAMN15532563
1001283B150304_161114_F8
GCA_015561015.1ScaffoldJADMSY000000000SAMN15532841
D53t1_180928_F8
GCA_015559165.1ScaffoldJADMPJ000000000SAMN15532845
1001136B_160425_C3
GCA_015559785.1ScaffoldJADMQP000000000SAMN15533133
D41t1_190614_D7
GCA_015667115.1ScaffoldJADPDO000000000SAMN15533072
1001271B_151109_C8
GCA_015560615.1ScaffoldJADMSD000000000SAMN15533179
D43t1_170807_H11
SRA Data Details
ParameterValue
Data volume, Gbases335
Data volume, Tbytes0.15

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