Bacteria (ID 609650) - BioProject

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Accession: PRJNA609650 ID: 609650

Bacteria

Genomic Epidemiology of Antibiotic-Resistant Bacteria from Agricultural Soil Fertilized with Poultry Manure in KwaZulu Natal, South Africa

This study aims to describe the molecular epidemiology of antibiotic-resistant bacteria in soil fertilized by poultry manure, specifically their clonality, putative resistance, and virulence genes and associated mobile genetic elements.

Accession	PRJNA609650
Data Type	Genome sequencing and assembly
Scope	Multispecies
Submission	Registration date: 4-Nov-2020 University of KwaZulu-Natal (UKZN), South Africa
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	54
Other datasets
BioSample	59
Assembly	54

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

54
54

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_015230525.1	JAAMSM000000000	SAMN14257471	1C2-5	Cellulosimicrobium cellulans
GCA_015230495.1	JAAMSN000000000	SAMN14257470	1B1-1	Cellulosimicrobium cellulans
GCA_015230695.1	JAAMSY000000000	SAMN14257459	8E1-2	Citrobacter freundii
GCA_015230755.1	JAAMSX000000000	SAMN14257460	8E1-5	Citrobacter freundii
GCA_015230675.1	JAAMSV000000000	SAMN14257462	9E1-3	Citrobacter freundii
GCA_015231155.1	JAAQOZ000000000	SAMN14389310	9RL2-14	Citrobacter freundii
GCA_015230995.1	JAAOLP000000000	SAMN14347827	19RL1-4	Citrobacter freundii
GCA_015230825.1	JAAMTA000000000	SAMN14257457	7C1-15	Enterobacter hormaechei
GCA_015230955.1	JAAOLS000000000	SAMN14347830	18C-21	Enterococcus casseliflavus
GCA_015230945.1	JAAOLQ000000000	SAMN14347828	16B1-19	Enterococcus casseliflavus
GCA_015230475.1	JAAMSL000000000	SAMN14257472	3C1-8	Enterococcus casseliflavus
GCA_015230435.1	JAAMSJ000000000	SAMN14257474	4A2-6	Enterococcus casseliflavus
GCA_015230395.1	JAAMSH000000000	SAMN14257476	4A1-53	Enterococcus casseliflavus
GCA_015230375.1	JAAMSG000000000	SAMN14257477	5D2-10	Enterococcus casseliflavus
GCA_015230345.1	JAAMSE000000000	SAMN14257479	5D2-51	Enterococcus casseliflavus
GCA_015230155.1	JAAMRU000000000	SAMN14257491	13D1-56	Enterococcus casseliflavus
GCA_015230245.1	JAAMRZ000000000	SAMN14257485	8L1-82	Enterococcus durans
GCA_015230455.1	JAAMSK000000000	SAMN14257473	3A2-2	Enterococcus faecalis
GCA_015230925.1	JAAOLR000000000	SAMN14347829	17RL2-14	Enterococcus faecalis
GCA_015230915.1	JAAOLT000000000	SAMN14347831	18RL1-45	Enterococcus faecalis
GCA_015230885.1	JAAOLU000000000	SAMN14347832	20D1-63	Enterococcus faecalis
GCA_015230875.1	JAAOLV000000000	SAMN14347833	20B1-9	Enterococcus faecalis
GCA_015230095.1	JAAMRT000000000	SAMN14257492	13D2-63	Enterococcus faecalis
GCA_015230135.1	JAAMRV000000000	SAMN14257490	11L2-121	Enterococcus faecium
GCA_015230285.1	JAAMSD000000000	SAMN14257481	6L3-36	Enterococcus faecium
GCA_015230275.1	JAAMSA000000000	SAMN14257484	8D1-48	Enterococcus faecium
GCA_015230235.1	JAAMSB000000000	SAMN14257483	7L3-69	Enterococcus faecium
GCA_015230205.1	JAAMRY000000000	SAMN14257487	9RL2-57	Enterococcus faecium
GCA_015230195.1	JAAMRW000000000	SAMN14257489	10L1-121	Enterococcus faecium
GCA_015230165.1	JAAMRX000000000	SAMN14257488	10B2-36	Enterococcus faecium
GCA_015230335.1	JAAMSC000000000	SAMN14257482	7A2-40	Enterococcus faecium
GCA_015230405.1	JAAMSI000000000	SAMN14257475	4A2-18	Enterococcus mundtii
GCA_015230715.1	JAAMSZ000000000	SAMN14257458	7E1-13	Escherichia coli
GCA_015230685.1	JAAMSW000000000	SAMN14257461	8B1-1	Escherichia coli
GCA_015230515.1	JAAMSO000000000	SAMN14257469	15L1-17	Escherichia coli
GCA_015230645.1	JAAMSU000000000	SAMN14257463	10B1-10	Escherichia coli
GCA_015230635.1	JAAMSS000000000	SAMN14257465	11E1-7	Escherichia coli
GCA_015230615.1	JAAMST000000000	SAMN14257464	10B1-1	Escherichia coli
GCA_015230585.1	JAAMSR000000000	SAMN14257466	11E1-11	Escherichia coli
GCA_015230575.1	JAAMSQ000000000	SAMN14257467	12E1-14	Escherichia coli
GCA_015230555.1	JAAMSP000000000	SAMN14257468	14RL1-1	Escherichia coli
GCA_015231195.1	JAAQPX000000000	SAMN14389311	9RL3-2	Escherichia coli
GCA_015230775.1	JAAMTC000000000	SAMN14257455	6A2-16	Escherichia coli
GCA_015230835.1	JAAMTE000000000	SAMN14257453	2C2-2	Escherichia coli
GCA_015230815.1	JAAMTB000000000	SAMN14257456	6D1-6	Escherichia coli
GCA_015230785.1	JAAMTD000000000	SAMN14257454	6A2-14	Escherichia coli
GCA_015231125.1	JAAQPA000000000	SAMN14389312	10RL2-5	Escherichia coli
GCA_015231095.1	JAAQPB000000000	SAMN14389313	12RL2-7	Escherichia coli
GCA_015231075.1	JAAOLO000000000	SAMN14347824	17RL3-2	Escherichia coli
GCA_015231065.1	JAAQPC000000000	SAMN14389314	15L1-13	Escherichia coli
GCA_015231055.1	JAAOLM000000000	SAMN14347822	17RLI-21	Escherichia coli
GCA_015231015.1	JAAOLN000000000	SAMN14347823	17RL3-52	Escherichia coli
GCA_015231025.1	JAAOLL000000000	SAMN14347820	16RL1-2	Escherichia coli
GCA_015230315.1	JAAMSF000000000	SAMN14257478	5E1-40	Paenibacillus donghaensis

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Bacteria

Genomic Epidemiology of Antibiotic-Resistant Bacteria from Agricultural Soil Fertilized with Poultry Manure in KwaZulu Natal, South Africa

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