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Accession: PRJNA297956 ID: 297956

Bacteria

Arabidopsis thaliana leaf-derived microbiota culture collections Genome sequencing and assembly

Arabidopsis leaf- and root-derived microbiota culture collections representing the majority of bacterial species that are reproducibly detectable by culture-independent community sequencing.
AccessionPRJNA297956
Data TypeGenome sequencing and assembly
ScopeMultispecies
PublicationsBai Y et al., "Functional overlap of the Arabidopsis leaf and root microbiota.", Nature, 2015 Dec 17;528(7582):364-9
SubmissionRegistration date: 2-Nov-2015
Max Planck Institute for Plant Breeding Research
Related Resources
RelevanceEvolution
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)5313
WGS master206
SRA Experiments2
Protein Sequences830149
Publications
PubMed1
Other datasets
BioSample206
Assembly206
Assembly details:
Assembly levelNumber of Assemblies
100
106
206
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_001424265.1ContigLMOV00000000SAMN04151660
Leaf160
GCA_001424425.1ScaffoldLMPT00000000SAMN04151676
Leaf191
GCA_001422065.1ContigLMLY00000000SAMN04151616
Leaf76
GCA_001422735.1ScaffoldLMLZ00000000SAMN04151617
Leaf78
GCA_001422105.1ContigLMMC00000000SAMN04151620
Leaf84
GCA_001423205.1ScaffoldLMOE00000000SAMN04151649
Leaf130
GCA_001422765.1ScaffoldLMMD00000000SAMN04151696
Leaf245
GCA_001422865.1ScaffoldLMMY00000000SAMN04151707
Leaf272
GCA_001423335.1ContigLMNK00000000SAMN04151714
Leaf289
GCA_001423365.1ContigLMNM00000000SAMN04151715
Leaf291
GCA_001421485.1ContigLMKK00000000SAMN04151684
Leaf210
GCA_001422695.1ContigLMLX00000000SAMN04151695
Leaf244
GCA_001422485.1ContigLMNF00000000SAMN04151711
Leaf283
GCA_001423605.1ContigLMOQ00000000SAMN04151730
Leaf335
GCA_001421565.1ContigLMKQ00000000SAMN04151687
Leaf222
GCA_001423525.1ContigLMOI00000000SAMN04151651
Leaf137
GCA_001424565.1ScaffoldLMOL00000000SAMN04151653
Leaf141
GCA_001423565.1ContigLMON00000000SAMN04151654
Leaf145
GCA_001422665.1ScaffoldLMLU00000000SAMN04151693
Leaf234
GCA_001423745.1ContigLMPC00000000SAMN04151732
Leaf337
GCA_001422645.1ScaffoldLMLR00000000SAMN04151612
Leaf69
GCA_001425575.1ContigLMRD00000000SAMN04151768
Leaf443
GCA_001423245.1ContigLMOH00000000SAMN04151726
Leaf324
GCA_001425485.1ContigLMQW00000000SAMN04151765
Leaf427
GCA_001424685.1ContigLMQT00000000SAMN04151771
Leaf454
GCA_001425525.1ScaffoldLMQY00000000SAMN04151774
Leaf460
GCA_001426005.1ScaffoldLMRJ00000000SAMN04151581
Leaf13
GCA_001426105.1ContigLMRU00000000SAMN04151758
Leaf406
GCA_001426125.1ContigLMRK00000000SAMN04151602
Leaf49
GCA_001426025.1ScaffoldLMRL00000000SAMN04151615
Leaf75
GCA_001426225.1ScaffoldLMRT00000000SAMN04151736
Leaf344
GCA_001424605.1ScaffoldLMQJ00000000SAMN04151753
Leaf396
GCA_001423865.2ScaffoldLMPN00000000SAMN04151670
Leaf182
GCA_001423685.1ScaffoldLMOY00000000SAMN04151663
Leaf168
GCA_001422455.1ContigLMNC00000000SAMN04151710
Leaf280
GCA_001424025.1ContigLMPZ00000000SAMN04151743
Leaf363
GCA_001424345.1ScaffoldLMPF00000000SAMN04151667
Leaf177
GCA_001424195.1ContigLMOO00000000SAMN04151729
Leaf334
GCA_001424125.1ScaffoldLMQI00000000SAMN04151752
Leaf395
GCA_001424585.1ContigLMPJ00000000SAMN04151669
Leaf180
GCA_001421435.1ContigLMKA00000000SAMN04151680
Leaf201
GCA_001424105.1ScaffoldLMQH00000000SAMN04151751
Leaf394
GCA_001424145.1ScaffoldLMQM00000000SAMN04151756
Leaf404
GCA_001425355.1ScaffoldLMQN00000000SAMN04151757
Leaf405
GCA_001424595.1ContigLMOS00000000SAMN04151657
Leaf154
GCA_001424385.1ScaffoldLMPO00000000SAMN04151671
Leaf183
GCA_001422205.1ContigLMMJ00000000SAMN04151701
Leaf261
GCA_001424185.1ScaffoldLMOM00000000SAMN04151728
Leaf326
GCA_001425445.1ScaffoldLMQU00000000SAMN04151764
Leaf420
GCA_001421945.1ScaffoldLMLO00000000SAMN04151609
Leaf64
GCA_001423125.1ContigLMNW00000000SAMN04151646
Leaf126
GCA_001421905.1ContigLMLM00000000SAMN04151607
Leaf61
GCA_001424405.1ContigLMPS00000000SAMN04151675
Leaf189
GCA_001422605.1ScaffoldLMLK00000000SAMN04151605
Leaf53
GCA_001423925.1ScaffoldLMPR00000000SAMN04151674
Leaf187
GCA_001423965.1ScaffoldLMPV00000000SAMN04151678
Leaf196
GCA_001423985.1ScaffoldLMPW00000000SAMN04151741
Leaf359
GCA_001422725.1ContigLMMA00000000SAMN04151618
Leaf82
GCA_001423665.1ScaffoldLMOX00000000SAMN04151662
Leaf164
GCA_001424285.1ContigLMPB00000000SAMN04151665
Leaf172
GCA_001423905.1ScaffoldLMPQ00000000SAMN04151673
Leaf186
GCA_001422145.1ScaffoldLMMF00000000SAMN04151698
Leaf254
GCA_001422285.1ContigLMMO00000000SAMN04151703
Leaf263
GCA_001424645.1ScaffoldLMQR00000000SAMN04151762
Leaf415
GCA_001421865.1ScaffoldLMLG00000000SAMN04151600
Leaf44
GCA_001421165.1ScaffoldLMKB00000000SAMN04151577
Leaf8
GCA_001423105.1ScaffoldLMNV00000000SAMN04151719
Leaf304
GCA_001424455.1ContigLMQA00000000SAMN04151744
Leaf369
GCA_001422325.1ContigLMMR00000000SAMN04151704
Leaf264
GCA_001423545.1ScaffoldLMOK00000000SAMN04151727
Leaf325
GCA_001423695.1ContigLMOZ00000000SAMN04151731
Leaf336
GCA_001424755.1ScaffoldLMRF00000000SAMN04151769
Leaf446
GCA_001424165.1ContigLMOJ00000000SAMN04151652
Leaf139
GCA_001422845.1ScaffoldLMMW00000000SAMN04151632
Leaf100
GCA_001422425.1ScaffoldLMMX00000000SAMN04151633
Leaf102
GCA_001422885.1ContigLMMZ00000000SAMN04151634
Leaf104
GCA_001422895.1ContigLMNB00000000SAMN04151635
Leaf106
GCA_001423265.1ContigLMND00000000SAMN04151636
Leaf108
GCA_001423285.1ScaffoldLMNE00000000SAMN04151637
Leaf111
GCA_001423295.1ContigLMNG00000000SAMN04151638
Leaf112
GCA_001423325.1ContigLMNJ00000000SAMN04151639
Leaf113
GCA_001422985.1ScaffoldLMNL00000000SAMN04151640
Leaf117
GCA_001422935.1ScaffoldLMNN00000000SAMN04151641
Leaf119
GCA_001423385.1ScaffoldLMNP00000000SAMN04151642
Leaf121
GCA_001423025.1ScaffoldLMNQ00000000SAMN04151643
Leaf122
GCA_001423405.1ScaffoldLMNS00000000SAMN04151644
Leaf123
GCA_001423085.1ScaffoldLMNU00000000SAMN04151645
Leaf125
GCA_001424445.1ScaffoldLMPY00000000SAMN04151742
Leaf361
GCA_001424525.1ScaffoldLMQK00000000SAMN04151754
Leaf399
GCA_001425465.1ContigLMQV00000000SAMN04151772
Leaf456
GCA_001424705.1ContigLMRA00000000SAMN04151775
Leaf465
GCA_001425565.1ContigLMRC00000000SAMN04151776
Leaf466
GCA_001424745.1ContigLMRE00000000SAMN04151777
Leaf469
GCA_001422125.1ContigLMME00000000SAMN04151621
Leaf85
GCA_001422165.1ScaffoldLMMG00000000SAMN04151622
Leaf86
GCA_001422775.1ScaffoldLMMI00000000SAMN04151623
Leaf87
GCA_001422795.1ScaffoldLMMK00000000SAMN04151624
Leaf88
GCA_001422215.1ScaffoldLMML00000000SAMN04151625
Leaf89
GCA_001422265.1ScaffoldLMMN00000000SAMN04151626
Leaf90
GCA_001422815.1ContigLMMP00000000SAMN04151627
Leaf91
GCA_001422305.1ScaffoldLMMQ00000000SAMN04151628
Leaf92
GCA_001422345.1ScaffoldLMMS00000000SAMN04151629
Leaf93
GCA_001426045.1ContigLMRM00000000SAMN04151630
Leaf94
GCA_001422375.1ScaffoldLMMU00000000SAMN04151631
Leaf99
GCA_001425425.1ContigLMQQ00000000SAMN04151761
Leaf414
GCA_001424665.1ContigLMQS00000000SAMN04151763
Leaf416
GCA_001425495.1ScaffoldLMQX00000000SAMN04151773
Leaf459
GCA_001424225.1ContigLMOR00000000SAMN04151656
Leaf151
GCA_001423615.1ScaffoldLMOU00000000SAMN04151659
Leaf159
GCA_001423645.1ContigLMOW00000000SAMN04151661
Leaf161
GCA_001423785.1ContigLMPH00000000SAMN04151668
Leaf179
GCA_001421275.1ScaffoldLMKF00000000SAMN04151682
Leaf203
GCA_001422925.1ContigLMNI00000000SAMN04151713
Leaf288
GCA_001423485.1ContigLMOD00000000SAMN04151724
Leaf320
GCA_001423805.1ContigLMPI00000000SAMN04151737
Leaf347
GCA_001423825.1ScaffoldLMPK00000000SAMN04151738
Leaf351
GCA_001424715.1ContigLMRB00000000SAMN04151767
Leaf436
GCA_001424485.1ContigLMQC00000000SAMN04151746
Leaf380
GCA_001422955.1ContigLMNH00000000SAMN04151712
Leaf285
GCA_001423135.1ScaffoldLMNY00000000SAMN04151721
Leaf307
GCA_001421325.1ContigLMJY00000000SAMN04151573
Leaf2
GCA_001422685.1ContigLMLV00000000SAMN04151614
Leaf72
GCA_001424305.1ScaffoldLMPD00000000SAMN04151666
Leaf176
GCA_001423945.1ContigLMPU00000000SAMN04151677
Leaf194
GCA_001421515.1ContigLMKM00000000SAMN04151685
Leaf216
GCA_001422545.1ContigLMLE00000000SAMN04151598
Leaf41
GCA_001421315.1ScaffoldLMJX00000000SAMN04151572
Leaf1
GCA_001423725.1ScaffoldLMPA00000000SAMN04151664
Leaf171
GCA_001423185.1ContigLMOB00000000SAMN04151723
Leaf314
GCA_001423155.1ScaffoldLMOA00000000SAMN04151647
Leaf127
GCA_001423465.1ScaffoldLMOC00000000SAMN04151648
Leaf129
GCA_001421425.1ContigLMKI00000000SAMN04151582
Leaf15
GCA_001425545.1ContigLMQZ00000000SAMN04151766
Leaf434
GCA_001421885.1ScaffoldLMLH00000000SAMN04151601
Leaf48
GCA_001422615.1ContigLMLL00000000SAMN04151606
Leaf58
GCA_001422075.1ScaffoldLMMB00000000SAMN04151619
Leaf83
GCA_001422365.1ContigLMMT00000000SAMN04151705
Leaf265
GCA_001422405.1ContigLMMV00000000SAMN04151706
Leaf267
GCA_001422445.1ScaffoldLMNA00000000SAMN04151708
Leaf274
GCA_001424545.1ContigLMQL00000000SAMN04151755
Leaf400
GCA_001423885.1ContigLMPP00000000SAMN04151672
Leaf185
GCA_001423005.1ContigLMNO00000000SAMN04151716
Leaf294
GCA_001423045.1ScaffoldLMNR00000000SAMN04151717
Leaf296
GCA_001423055.1ContigLMNT00000000SAMN04151718
Leaf299
GCA_001424245.1ScaffoldLMOT00000000SAMN04151658
Leaf155
GCA_001421235.1ContigLMKD00000000SAMN04151681
Leaf202
GCA_001422245.1ContigLMMM00000000SAMN04151702
Leaf262
GCA_001423425.1ContigLMNX00000000SAMN04151720
Leaf306
GCA_001423445.1ScaffoldLMNZ00000000SAMN04151722
Leaf311
GCA_001423215.1ScaffoldLMOF00000000SAMN04151725
Leaf321
GCA_001424325.1ScaffoldLMPE00000000SAMN04151734
Leaf341
GCA_001424045.1ScaffoldLMQB00000000SAMN04151745
Leaf371
GCA_001425345.1ContigLMQD00000000SAMN04151747
Leaf383
GCA_001424065.1ScaffoldLMQE00000000SAMN04151748
Leaf384
GCA_001424085.1ScaffoldLMQF00000000SAMN04151749
Leaf386
GCA_001424505.1ScaffoldLMQG00000000SAMN04151750
Leaf391
GCA_001425605.1ScaffoldLMRG00000000SAMN04151770
Leaf453
GCA_001421985.1ContigLMLQ00000000SAMN04151611
Leaf68
GCA_001426145.1ScaffoldLMRN00000000SAMN04151688
Leaf225
GCA_001426165.1ContigLMRO00000000SAMN04151692
Leaf233
GCA_001426185.1ScaffoldLMRP00000000SAMN04151697
Leaf247
GCA_001426065.1ContigLMRQ00000000SAMN04151700
Leaf258
GCA_001426085.1ContigLMRR00000000SAMN04151709
Leaf278
GCA_001425985.1ScaffoldLMRI00000000SAMN04151576
Leaf7
GCA_001425965.1ContigLMRH00000000SAMN04151574
Leaf3
GCA_001422565.1ScaffoldLMLI00000000SAMN04151603
Leaf50
GCA_001422575.1ScaffoldLMLJ00000000SAMN04151604
Leaf51
GCA_001421665.1ContigLMKV00000000SAMN04151590
Leaf26
GCA_001421245.1ScaffoldLMKE00000000SAMN04151579
Leaf10
GCA_001421285.1ContigLMKG00000000SAMN04151580
Leaf11
GCA_001421405.1ContigLMKJ00000000SAMN04151583
Leaf16
GCA_001421505.1ContigLMKL00000000SAMN04151584
Leaf17
GCA_001424005.1ContigLMPX00000000SAMN04151679
Leaf198
GCA_001421535.1ContigLMKN00000000SAMN04151585
Leaf20
GCA_001421415.1ScaffoldLMKH00000000SAMN04151683
Leaf208
GCA_001421715.1ScaffoldLMKP00000000SAMN04151586
Leaf22
GCA_001421625.1ContigLMKT00000000SAMN04151689
Leaf226
GCA_001421585.1ContigLMKR00000000SAMN04151587
Leaf23
GCA_001421745.1ScaffoldLMKW00000000SAMN04151690
Leaf230
GCA_001421995.1ContigLMLS00000000SAMN04151691
Leaf231
GCA_001421605.1ContigLMKS00000000SAMN04151588
Leaf24
GCA_001422045.1ContigLMLW00000000SAMN04151694
Leaf242
GCA_001421635.1ScaffoldLMKU00000000SAMN04151589
Leaf25
GCA_001422185.1ContigLMMH00000000SAMN04151699
Leaf257
GCA_001421685.1ScaffoldLMKX00000000SAMN04151591
Leaf28
GCA_001422495.1ScaffoldLMKY00000000SAMN04151592
Leaf29
GCA_001422525.1ScaffoldLMKZ00000000SAMN04151593
Leaf30
GCA_001421765.1ContigLMLA00000000SAMN04151594
Leaf32
GCA_001421785.1ScaffoldLMLB00000000SAMN04151595
Leaf33
GCA_001426195.1ContigLMRS00000000SAMN04151733
Leaf339
GCA_001421805.1ContigLMLC00000000SAMN04151596
Leaf34
GCA_001423765.1ContigLMPG00000000SAMN04151735
Leaf343
GCA_001423845.1ContigLMPM00000000SAMN04151740
Leaf357
GCA_001421825.1ScaffoldLMLD00000000SAMN04151597
Leaf38
GCA_001425385.1ContigLMQO00000000SAMN04151759
Leaf407
GCA_001425405.1ScaffoldLMQP00000000SAMN04151760
Leaf412
GCA_001421845.1ContigLMLF00000000SAMN04151599
Leaf42
GCA_001421155.1ScaffoldLMJZ00000000SAMN04151575
Leaf5
GCA_001421915.1ScaffoldLMLN00000000SAMN04151608
Leaf62
GCA_001421965.1ContigLMLP00000000SAMN04151610
Leaf67
GCA_001421355.1ContigLMKC00000000SAMN04151578
Leaf9
GCA_001422025.1ScaffoldLMLT00000000SAMN04151613
Leaf70
GCA_001424365.1ContigLMPL00000000SAMN04151739
Leaf354
GCA_001423495.1ScaffoldLMOG00000000SAMN04151650
Leaf131
GCA_001423585.1ContigLMOP00000000SAMN04151655
Leaf148
GCA_001421705.1ScaffoldLMKO00000000SAMN04151686
Leaf220
SRA Data Details
ParameterValue
Data volume, Gbases8
Data volume, Mbytes3734

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    Arabidopsis thaliana leaf-derived microbiota culture collections Genome sequencing and assembly
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