hospital metagenome (ID 857686) - BioProject

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The following term was not found in BioProject: opopop.

Accession: PRJNA857686 ID: 857686

hospital metagenome

NSPHL HAI WGS raw reads

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This project is a component of the CDC HAI-Seq

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32 additional projects are components of the CDC HAI-Seq.

Fastq files for HAI bacteria sequenced at the Nevada State Public Health Lab

Accession	PRJNA857686
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Organism	hospital metagenome[Taxonomy ID: 1755691] unclassified sequences; metagenomes; ecological metagenomes; hospital metagenome
Submission	Registration date: 8-Feb-2024 Nevada State Public Health Laboratory submission group

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	56
SRA Experiments	1330
Other datasets
BioSample	1465
Assembly	56

Assembly details:

Download

Assembly level

Number of Assemblies

Contig

Total

56
56

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_036869925.1	ABQJSQ000000000	SAMN40089448	2024CE-CRAB_02_23_040	Acinetobacter baumannii
GCA_036869905.1	ABQJSP000000000	SAMN40089449	2024CE-CRAB_02_23_039	Acinetobacter baumannii
GCA_036869885.1	ABQJSO000000000	SAMN40089450	2024CE-CRAB_02_23_038	Acinetobacter baumannii
GCA_036869865.1	ABQJSM000000000	SAMN40089451	2024CE-CRAB_02_23_037	Acinetobacter baumannii
GCA_036869845.1	ABQJSN000000000	SAMN40089459	2024CE-CRAB_02_23_029	Acinetobacter baumannii
GCA_036869825.1	ABQJSL000000000	SAMN40089461	2024CE-CRAB_02_23_027	Acinetobacter baumannii
GCA_040183795.1	ABSYPK000000000	SAMN41829227	2024CE-CRE_06_13_003	Enterobacter hormaechei
GCA_040183695.1	ABSYPD000000000	SAMN41829229	2024CE-CRE_06_13_001	Enterobacter hormaechei
GCA_040071125.1	ABSTPM000000000	SAMN41675194	2024CE-CRO_06_04_022	Klebsiella pneumoniae
GCA_040071085.1	ABSTPI000000000	SAMN41675205	2024CE-CRO_06_04_011	Klebsiella pneumoniae
GCA_040071055.1	ABSTPK000000000	SAMN41675199	2024CE-CRO_06_04_017	Klebsiella pneumoniae
GCA_040070965.1	ABSTPH000000000	SAMN41675207	2024CE-CRO_06_04_009	Klebsiella pneumoniae
GCA_040070945.1	ABSTPF000000000	SAMN41675212	2024CE-CRO_06_04_004	Klebsiella pneumoniae
GCA_040070955.1	ABSTPE000000000	SAMN41675215	2024CE-CRO_06_04_001	Klebsiella pneumoniae
GCA_040068995.1	ABSTLN000000000	SAMN41675196	2024CE-CRO_06_04_020	Klebsiella pneumoniae
GCA_040068915.1	ABSTLL000000000	SAMN41675198	2024CE-CRO_06_04_018	Klebsiella pneumoniae
GCA_040068895.1	ABSTLI000000000	SAMN41675202	2024CE-CRO_06_04_014	Klebsiella pneumoniae
GCA_040068875.1	ABSTLE000000000	SAMN41675211	2024CE-CRO_06_04_005	Klebsiella pneumoniae
GCA_040068855.1	ABSTLF000000000	SAMN41675209	2024CE-CRO_06_04_007	Klebsiella pneumoniae
GCA_040068835.1	ABSTLG000000000	SAMN41675206	2024CE-CRO_06_04_010	Klebsiella pneumoniae
GCA_040068775.1	ABSTLD000000000	SAMN41675213	2024CE-CRO_06_04_003	Klebsiella pneumoniae
GCA_040068755.1	ABSTLC000000000	SAMN41675214	2024CE-CRO_06_04_002	Klebsiella pneumoniae
GCA_040069035.1	ABSTLP000000000	SAMN41675193	2024CE-CRO_06_04_023	Klebsiella pneumoniae
GCA_040069015.1	ABSTLM000000000	SAMN41675197	2024CE-CRO_06_04_019	Klebsiella pneumoniae
GCA_040068975.1	ABSTLK000000000	SAMN41675200	2024CE-CRO_06_04_016	Klebsiella pneumoniae
GCA_040068935.1	ABSTLJ000000000	SAMN41675201	2024CE-CRO_06_04_015	Klebsiella pneumoniae
GCA_040068945.1	ABSTLH000000000	SAMN41675204	2024CE-CRO_06_04_012	Klebsiella pneumoniae
GCA_040069075.1	ABSTLO000000000	SAMN41675195	2024CE-CRO_06_04_021	Klebsiella pneumoniae
GCA_040071045.1	ABSTPJ000000000	SAMN41675203	2024CE-CRO_06_04_013	Klebsiella pneumoniae
GCA_040071025.1	ABSTPL000000000	SAMN41675208	2024CE-CRO_06_04_008	Klebsiella pneumoniae
GCA_040071005.1	ABSTPG000000000	SAMN41675210	2024CE-CRO_06_04_006	Klebsiella pneumoniae
GCA_036481435.1	ABQEYU000000000	SAMN39655742	ST309	Pseudomonas aeruginosa
GCA_036481375.1	ABQEYS000000000	SAMN39655743	ST274	Pseudomonas aeruginosa
GCA_036481295.1	ABQEYR000000000	SAMN39655745	ST2572	Pseudomonas aeruginosa
GCA_036481275.1	ABQEYT000000000	SAMN39655744	ST244	Pseudomonas aeruginosa
GCA_039644575.1	ABSFAV000000000	SAMN41394568	2024CE-CRO_05_13_017	Streptococcus pneumoniae
GCA_039644555.1	ABSFAX000000000	SAMN41394563	2024CE-CRO_05_13_022	Streptococcus pneumoniae
GCA_039638145.1	ABSEQS000000000	SAMN41394565	2024CE-CRO_05_13_020	Streptococcus pneumoniae
GCA_039638125.1	ABSEQR000000000	SAMN41394571	2024CE-CRO_05_13_014	Streptococcus pneumoniae
GCA_039638105.1	ABSEQT000000000	SAMN41394564	2024CE-CRO_05_13_021	Streptococcus pneumoniae
GCA_039638075.1	ABSEQN000000000	SAMN41394572	2024CE-CRO_05_13_013	Streptococcus pneumoniae
GCA_039638055.1	ABSEQK000000000	SAMN41394574	2024CE-CRO_05_13_011	Streptococcus pneumoniae
GCA_039637685.1	ABSEPX000000000	SAMN41394579	2024CE-CRO_05_13_006	Streptococcus pneumoniae
GCA_039637675.1	ABSEQA000000000	SAMN41394578	2024CE-CRO_05_13_007	Streptococcus pneumoniae
GCA_039637855.1	ABSEQE000000000	SAMN41394562	2024CE-CRO_05_13_023	Streptococcus pneumoniae
GCA_039637815.1	ABSEQD000000000	SAMN41394569	2024CE-CRO_05_13_016	Streptococcus pneumoniae
GCA_039637795.1	ABSEQC000000000	SAMN41394566	2024CE-CRO_05_13_019	Streptococcus pneumoniae
GCA_039637775.1	ABSEQB000000000	SAMN41394567	2024CE-CRO_05_13_018	Streptococcus pneumoniae
GCA_039637755.1	ABSEPY000000000	SAMN41394576	2024CE-CRO_05_13_009	Streptococcus pneumoniae
GCA_039637735.1	ABSEPZ000000000	SAMN41394573	2024CE-CRO_05_13_012	Streptococcus pneumoniae
GCA_039637995.1	ABSEQJ000000000	SAMN41394580	2024CE-CRO_05_13_005	Streptococcus pneumoniae
GCA_039637975.1	ABSEQL000000000	SAMN41394577	2024CE-CRO_05_13_008	Streptococcus pneumoniae
GCA_039637955.1	ABSEQM000000000	SAMN41394581	2024CE-CRO_05_13_004	Streptococcus pneumoniae
GCA_039637565.1	ABSEPP000000000	SAMN41394582	2024CE-CRO_05_13_003	Streptococcus pneumoniae
GCA_039637525.1	ABSEPQ000000000	SAMN41394570	2024CE-CRO_05_13_015	Streptococcus pneumoniae
GCA_039639695.1	ABSETD000000000	SAMN41394575	2024CE-CRO_05_13_010	Streptococcus pneumoniae

SRA Data Details

Parameter	Value
Data volume, Gbases	1,286
Data volume, Tbytes	0.44

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hospital metagenome

NSPHL HAI WGS raw reads

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