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Organizing biological data
SLAF-seq of 188 soybean cultivars
Paenibacillus polymyxa strain:188
Paenibacillus polymyxa strain:188 Genome sequencing and assembly
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18S V9 amplicon sequencing of Plankton Planet pilot project DNA samples (stations 001 to 188)
differential expression of human A549 cell upon infection with IAV SC35M wt and SC35M NS1 184-188 mutant
Comparative genomics and selection analysis of Yeonsan Ogye Black chicken with whole-genome sequencing reveals signature of selection
This study is the first whole-genome sequencing study of Yeonsan Ogye Black chicken(Korean indigenous chicken). we identify the nucleotide diversity, linkage disequilibrium pattern, phylogenetic tree analysis, genetic differentiation, admixture analysis, and genome-wide selection analysis across the 188 chickens from 13 populations. We identified the selection signature of OGYE. Our results showed that the OGYE preserved unique genetic characteristics, both phenotypic and genotypic, distinguished from other chicken breeds. Importantly, we identified RNASEL, BRIP1, HSP90AA1, and TLR4 gene regions as essential for promoting the innate immune system, while the SPP1 gene might be essential for developing eggshells in OGYE. Together, our result provides novel insights into the chicken breeding program to manage risk and vulnerability through the indigenous animal genetic resource and facilitate the conservation of OGYE.
Staphylococcus aureus strain:KZ_188
Staphylococcus aureus strain:KZ_188 Genome sequencing and assembly
sediment metagenome
Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_188
Olpidium sp. strain:OlpTTP4mda3long_188
Olpidium sp. strain:OlpTTP4mda3long_188 Genome sequencing
Olpidium sp. strain:OlpTTP4mda3short_188
Olpidium sp. strain:OlpTTP4mda3short_188 Genome sequencing
Vibrio splendidus strain:188-18 | isolate:188-18
Vibrio splendidus strain:188-18 | isolate:188-18 Genome sequencing
Vibrio lentus strain:188-14 | isolate:188-14
Vibrio lentus strain:188-14 | isolate:188-14 Genome sequencing
Escherichia coli strain:188 | isolate:188
Escherichia coli strain:188 | isolate:188 Genome sequencing
ESBL-producing E. coli from Children and Domestic Animals in Ecuador
Environmental Spread of Extended Spectrum Beta-lactamase (ESBL) Producing E. coli and ESBL Genes Among Children and Domestic Animals in Ecuador
Sorghum bicolor cultivar:PI_505717
Sorghum bicolor PI_505717 transcriptome - S.bicolor_B_188_PI_505717_R5587
Miscanthus sacchariflorus x Miscanthus sinensis cultivar:PF30022 x PMS-009
Miscanthus sacchariflorus lutarioriparius PF30022 x Miscanthus sinensis PMS-009 Population Resequencing - 14UI-021.188 genome sequencing
Miscanthus sacchariflorus x Miscanthus sinensis cultivar:PF30022 x PMS-014
Miscanthus sacchariflorus lutarioriparius PF30022 x Miscanthus sinensis PMS-014 F1 Population Resequencing - 14UI-026.188 genome sequencing
Characterization of a novel microRNA, miR-188, elevated in serum of muscular dystrophy dog model
Aquilegia coerulea x Aquilegia chrysantha cultivar:Goldsmith x UCSB-ach
Aquilegia coerula Goldsmith X Aquilegia chrysantha UCSB-Ach Mapping Population - 188 genome sequencing
Human Postmortem Microbiome - Ecology of 188 Cases
leaf litter metagenome
Leaf litter microbial communities from grasslands in Loma Ridge, Limestone Canyon Regional Park, California, United States - ORA_Feb11_16XN_188_C9 metagenome
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