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Organizing biological data
scRNA-seq analysis of lung neutrophils from mice, 24 hours after intranasal exposure to vehicle, 100 ng LPS and 10 µg LPS
Analysis of mouse enteroids and colonoids (3D organoid models from small intestine and colon) exposed to chemotherapy agent 5-fluorouracil (5FU) in a dose-repeated exposure across three doses (10,100 and 1000uM) and sampled at three points (24, 48 and 72h) since initial exposure. Organoids were generated from C57BL/6J wild-type mice.
Analysis of human enteroids and colonoids (3D organoid models from small intestine and colon) exposed to chemotherapy agent 5-fluorouracil (5FU) in a dose-repeated exposure across three doses (10,100 and 1000uM) and sampled at three points (24, 48 and 72h) since initial exposure. Organoids were obtained from healthy human tissues.
RNA sequencing for enteroids treated with different concentrations of IL-17 (0 ng/ml. 1 ng/ml, 10 ng/ml and 100 ng/ml)
Sugarcane top was ensiled with or without 1% and 2% pyroligneous acid for 5, 10, 20, and 100 days. The 16s rDNA sequencing reveal bacterial communities of stylo silage after ensiling.
ESBL-producing E. coli from Children and Domestic Animals in Ecuador
Environmental Spread of Extended Spectrum Beta-lactamase (ESBL) Producing E. coli and ESBL Genes Among Children and Domestic Animals in Ecuador
Populus trichocarpa cultivar:1_100_10_26274
Populus trichocarpa 1_100_10_26274 Gene Expression Profiling - Leaf transcriptome
peat metagenome
Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_100_10 metagenome
Escherichia coli strain:MG1655 IR-10-100
Escherichia coli MG1655 IR-10-100 population Resequencing
EMG produced TPA metagenomics assembly of the Synthetic Metagenome. Defined molar ratio of 1,000:100:10:10:1 for Escherichia coli E2348/69:Butyrivibrio proteoclasticus B316T:Prevotella ruminicola 23:E. coli REL606:Lactococcus lactis IL1403. Verious stages of normalisation via DSN and HAP normali (synthetic metagenome) data set.
RNA-seq of human ovarian adenocarcinoma cell line SKOV3 treated with bisphenol A (10 or 100 nM) against untreated controls
wetland metagenome
Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100 metagenome
Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100 metagenome
marine metagenome
Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_F_10_SI03_100 metagenome
Dorcoceras hygrometricum
Genome-wide transcriptome analysis during dehydration in leaf tissues of Boea hygrometrica (10%, 50% and 100%)
Sequencing of Pseudomonas aeruginosa isolates from young cystic fibrosis patients
YM155 selected genetrapped KBM7 cells
Mutagenized cell population of 100x10e6 KBM7 cells that were selected with 100 nM YM155 over 10 days of total treatment.
Refseq Prokaryotic Genome Annotation Project
Streptococcus mutans UA159
Transcriptional profiling of Streptococcus mutans UA159 grown in continuous culture using TV media supplemented with 10 mM versus 100 mM glucose.
Drosophila melanogaster
ChIP-chip time-course from DmD8 cells with Su(H) antibody after 0, 10, 20, 30 40, 60 and 100 minutes Notch activation
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