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Organizing biological data
RNAseq of camta3/dsc1/dsc2 after elf18 or mock treatment, against wt control, at 10, 30 and 90 minutes
Transcriptomics study on HepG2 cells treated with 0.001 μM 2,4-D for 0, 10, 30, 360 min
Panicum virgatum cultivar:FLAME 1041-30-4-10 Pv
Panicum virgatum FLAME 1041-30-4-10 Pv Resequencing genome sequencing
Panicum virgatum cultivar:FLAME 1040-30-1-10 Pv
Panicum virgatum FLAME 1040-30-1-10 Pv Resequencing genome sequencing
Analysis of human healthy enteroids and colonoids (3D organoid models from small intestine and colon) exposed to chemotherapy agent Doxorubicin (DOX) sampled at four doses (1,10, 30 and 60uM) and three time points (24, 48 and 72h).
RNA-Seq analysis of wild type Pseudomonas aeruginosa adhered to a surface for 5, 10, 15, 30, 45, or 60min
food fermentation metagenome
ITS sequencing for fungal community of fermented grains at day 0, 5, 10, 15, 20 and 30
Amplicon sequencing of the fermented grains at day 0, 5, 10, 15, 20 and 30
ESBL-producing E. coli from Children and Domestic Animals in Ecuador
Environmental Spread of Extended Spectrum Beta-lactamase (ESBL) Producing E. coli and ESBL Genes Among Children and Domestic Animals in Ecuador
Microbial imbalance in inflammatory bowel disease patients at different taxonomic levels
We have performed 16S sequencing experiment on faecal samples obtained from 30 individuals (9 Crohn's disease patients, 11 ulcerative colitis (UC) patients and 10 healthy volunteers). In this study, we examined the imbalance in the gut microbiota in IBD patients compared to healthy volunteers. We find that the gut microbiota of IBD patients is less biodiverse than healthy individuals. Also, the changes are mainly in 4 most abundant phyla including Firmicutes, Bacteroidetes, Actinobacteria and Proteobacteria.
RNAseq of total, soluble and insoluble fraction of WT and mutant yeast cells after 10 minutes at 30, 40 or 42°C
Dual RNA-seq of Gymnosporangium yamadae inoculated apple leaves and mock-inoculated apple leaves at 10 dpi and 30 dpi
EMG produced TPA metagenomics assembly of the Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 8_30_10_142_A2 metaG metagenome (bioreactor metagenome) data set.
Populus trichocarpa cultivar:GLCB-26-1
Populus trichocarpa GLCB-26-1_30_10_LEAF eQTN mapping transcriptome
Acetivibrio thermocellus strain:LL1004
Ruminiclostridium thermocellum LL1004 transcriptomics - 036_CIV_30_10_2014_LL1004_Nlimit-v2 transcriptome
Ruminiclostridium thermocellum LL1004 transcriptomics - 036_CIV_30_10_2014_LL1004_Nlimit transcriptome
Ruminiclostridium thermocellum LL1004 transcriptomics - 035_CIII_30_10_2014_LL1004_Nlimit-v2 transcriptome
Ruminiclostridium thermocellum LL1004 transcriptomics - 035_CIII_30_10_2014_LL1004_Nlimit transcriptome
Ruminiclostridium thermocellum LL1004 transcriptomics - 034_CII_30_10_2014_LL1004_Nlimit-v2 transcriptome
Ruminiclostridium thermocellum LL1004 transcriptomics - 033_CI_30_10_2014_LL1004_Nlimit-v2 transcriptome
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