See
Genome Information for Danio rerio
oligo-dT and random primed RNA-seq libraries were used to test an improved annotation of the zebrafish transcriptome
Overall design: RNA-seq was performed on transgene-positive cells isolated by FACS
| Accession | PRJNA640350; GEO: GSE152759 |
| Data Type | Transcriptome or Gene expression |
| Scope | Multiisolate |
| Organism | Danio rerio[Taxonomy ID: 7955] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio; Danio rerio |
| Publications | Lawson ND et al., "An improved zebrafish transcriptome annotation for sensitive and comprehensive detection of cell type-specific genes.", Elife, 2020 Aug 24;9 |
| Grants | - "Identification of blood-brain-barrier pericyte-specific cis regulatory elements" (Grant ID R21 NS105654, National Institute of Neurological Disorders and Stroke)
- "Embryonic origins of endothelial heterogeneity" (Grant ID R35 HL140017, National Heart, Lung, and Blood Institute)
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| Submission | Registration date: 18-Jun-2020
Molecular, Cell, and Cancer Biology, University of Massachusetts Medical School |
| Relevance | Model Organism |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 12 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 12 |
| GEO DataSets | 1 |