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Accession: PRJDB9502 ID: 639999

rice paddy metagenome

Bacterial and leptospiral metabarcoding sequence data in central region of Sri Lanka

Bacterial and leptospiral multiplex metabarcoding analysis based on bacterial universal 16S rRNA V4, leptospiral 16S rRNA, and lipL32 partial gene fragments. More...
AccessionPRJDB9502
Data TypeTargeted Locus (Loci)
ScopeEnvironment
Organismrice paddy metagenome[Taxonomy ID: 1672641]
unclassified sequences; metagenomes; ecological metagenomes; rice paddy metagenome
PublicationsGamage CD et al., "Understanding leptospirosis eco-epidemiology by environmental DNA metabarcoding of irrigation water from two agro-ecological regions of Sri Lanka.", PLoS Negl Trop Dis, 2020 Jul;14(7):e0008437
Grants
  • "KAKENHI" (Grant ID JP17K19298, Japan Society for the Promotion of Science)
  • "KAKENHI" (Grant ID JP18H02655, Japan Society for the Promotion of Science)
SubmissionRegistration date: 16-Jun-2020
Center for Strategic Research Project, Organization for Research Promotion, University of the Ryukyus
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments44
Publications
PubMed1
PMC1
Other datasets
BioSample44
SRA Data Details
ParameterValue
Data volume, Gbases2
Data volume, Mbytes1005

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