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Accession: PRJEB29972 ID: 639746

Regulatory architecture and variation of gene expression in wild and domesticated barley

These data were generated to test for allele-specific expression on a genome-wide scale. Both cis- and trans-acting factors contribute to gene expression. In diploid hybrids, both alleles experience the same nuclear environment, so trans effects will cancel out. This means that if both alleles in the hybrid are not expressed at the same level, cis-acting factors must be responsible for the imbalance. In additon to using accessions of various domestication status (wild material, landraces, as well as cultivars) we also used cold (4 degrees C) treatment as a stress (versus control temperature).

These data were generated to test for allele-specific expression on a genome-wide scale. More...
AccessionPRJEB29972
ScopeMonoisolate
PublicationsHaas M et al., "The contribution of cis- and trans-acting variants to gene regulation in wild and domesticated barley under cold stress and control conditions.", J Exp Bot, 2020 May 9;71(9):2573-2584
SubmissionRegistration date: 16-Jun-2020
Leibniz Institute of Plant Genetics and Crop Plant Research
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments127
Publications
PubMed1
PMC1
Other datasets
BioSample127
SRA Data Details
ParameterValue
Data volume, Gbases1,029
Data volume, Tbytes0.42

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