This SuperSeries is composed of the SubSeries listed below.
Overall design: Refer to individual Series
| Accession | PRJNA639725; GEO: GSE152570 |
| Type | Umbrella project |
| Publications | Kundariya H et al., "MSH1-induced heritable enhanced growth vigor through grafting is associated with the RdDM pathway in plants.", Nat Commun, 2020 Oct 22;11(1):5343 |
| Submission | Registration date: 16-Jun-2020
The Pennsylvania State University |
| Relevance | Superseries |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 54 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 54 |
| GEO DataSets | 7 |
Heritable enhanced growth vigor through grafting is associated with the RdDM pathway in plants encompasses the following 6 sub-projects:
| Project Type | Number of Projects |
| Epigenomics | 2 |
BioProject
accession | Organism | Title |
|---|
| PRJNA639731 | Arabidopsis thaliana | Bisulfite (methylome) sequencing of progenies of Col-0 grafted on msh1; Col-0 grafted on dcl2,3,4,msh1; Col-0 grafted on Col-0; msh1 mutant; dcl2,3,4,msh1 quadruple mutant in Arabidopsis [msh1_graft_BS-seq] (The Pennsylvania State University) | | PRJNA639735 | Solanum lycopersicum | Heritable enhanced growth vigor through grafting is associated with the RdDM pathway in plants [tomato_graft_methylome] (The Pennsylvania State University) |
|
| Transcriptome or Gene expression | 4 |
BioProject
accession | Organism | Title |
|---|
| PRJNA639732 | Arabidopsis thaliana | Total RNA sequencing of progenies of Col-0 grafted on msh1; Col-0 grafted on dcl2,3,4,msh1; Col-0 grafted on Col-0 in Arabidopsis [msh1_graft_leaf_RNA-seq] (The Pennsylvania State University) | | PRJNA639733 | Arabidopsis thaliana | RNA sequencing of progenies of Col-0 grafted on msh1; Col-0 grafted on dcl2,3,4,msh1 quadruple mutant in Arabidopsis [msh1_graft_root_RNA-seq] (The Pennsylvania State University) | | PRJNA639734 | Arabidopsis thaliana | Small RNA sequencing of progenies of Col-0 grafted on msh1; Col-0 grafted on dcl2,3,4,msh1; msh1 mutant; dcl2,3,4,msh1 quadruple mutant in Arabidopsis [msh1_graft_sRNA-seq] (The Pennsylvania State University) | | PRJNA639736 | Solanum lycopersicum | Heritable enhanced growth vigor through grafting is associated with the RdDM pathway in plants [Tomato_graft_RNAseq] (The Pennsylvania State University) |
|