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Accession: PRJNA639303 ID: 639303

Next generation sequencing of FFPE human colon cancer samples for validation of ColoType consensus molecular subtype (CMS) assay (human)

See Genome Information for Homo sapiens
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66644 additional projects are related by organism.
Purpose: To validate the novel ColoType assay for computing consensus molecular subtypes of colon cancer tumor samples Method: Whole-genome RNA-sequencing of colon cancer samples from formalin-fixed paraffin-embedded (FFPE) provided data for consensus molecular subtyping samples using multiple independent methods, including the novel ColoType method. More...
AccessionPRJNA639303; GEO: GSE152430
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismHomo sapiens[Taxonomy ID: 9606]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens
PublicationsBuechler SA et al., "ColoType: a forty gene signature for consensus molecular subtyping of colorectal cancer tumors using whole-genome assay or targeted RNA-sequencing.", Sci Rep, 2020 Jul 21;10(1):12123
SubmissionRegistration date: 13-Jun-2020
Appl. Comp. Math & Statistics, University of Notre Dame
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments49
Publications
PubMed1
PMC1
Other datasets
BioSample49
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes30
SRA Data Details
ParameterValue
Data volume, Gbases323
Data volume, Tbytes0.12

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