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Accession: PRJNA639173 ID: 639173

ConnecTF: A platform to integrate validated transcription factor-target interactions to build and refine gene regulatory networks (thale cress)

See Genome Information for Arabidopsis thaliana
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5935 additional projects are related by organism.
The direct targets of 16 TFs were identified using the TARGET system. Arabidopsis plants were grown on 1/2X MS media and after 10 days protoplasts were generated from root tissue, Cells were transfected with a vector containing the GR-TF fusion and incubated overnight. More...
AccessionPRJNA639173; GEO: GSE152405
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismArabidopsis thaliana[Taxonomy ID: 3702]
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana
PublicationsBrooks MD et al., "ConnecTF: A platform to integrate transcription factor-gene interactions and validate regulatory networks.", Plant Physiol, 2021 Feb 25;185(1):49-66
SubmissionRegistration date: 12-Jun-2020
Coruzzi, Biology - CGSB, New York University
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RelevanceModel Organism
Project Data:
Resource NameNumber
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Sequence data
SRA Experiments56
Publications
PubMed1
PMC1
Other datasets
BioSample56
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes7
SRA Data Details
ParameterValue
Data volume, Gbases94
Data volume, Mbytes35383

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