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Accession: PRJNA638932 ID: 638932

MATR3 ChIP-seq analysis from C2C12 differentiated myotubes upon pCharme lncRNA knockdown (house mouse)

See Genome Information for Mus musculus
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47588 additional projects are related by organism.
Identification of pCharme dependent Matrin3 chromatin binding sites by ChIP-seq analysis performed in pCharme depleted vs control myoutubes Overall design: C2C12 cells were transfected wirth GAP-scr vs GAP-1 LNA gapmers against pCharme lncRNA and induced to differentiate. More...
AccessionPRJNA638932; GEO: GSE152308
Data TypeEpigenomics
ScopeMultiisolate
OrganismMus musculus[Taxonomy ID: 10090]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus; Mus musculus
PublicationsDesideri F et al., "Intronic Determinants Coordinate Charme lncRNA Nuclear Activity through the Interaction with MATR3 and PTBP1.", Cell Rep, 2020 Dec 22;33(12):108548
SubmissionRegistration date: 11-Jun-2020
Biologia e Biotecnologue C. Darwin, La Sapienza
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments8
Publications
PubMed1
PMC1
Other datasets
BioSample8
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes1
SRA Data Details
ParameterValue
Data volume, Gbases14
Data volume, Mbytes5179

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