This SuperSeries is composed of the SubSeries listed below.
Overall design: Refer to individual Series
| Accession | PRJNA638624; GEO: GSE152205 |
| Type | Umbrella project |
| Publications | Conway ME et al., "STAT3 and GR Cooperate to Drive Gene Expression and Growth of Basal-Like Triple-Negative Breast Cancer.", Cancer Res, 2020 Oct 15;80(20):4355-4370 |
| Submission | Registration date: 10-Jun-2020
Varley Lab, Department of Oncological Sciences, Huntsman Cancer Institute University of Utah |
| Relevance | Superseries |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 58 |
| Publications |
| PubMed | 1 |
| Other datasets |
| BioSample | 58 |
| GEO DataSets | 4 |
Integrated analysis of DNA methylation, chromatin accessibility, transcription factor binding, and gene expression in large collections of breast cancer cell lines and patient tumors encompasses the following 3 sub-projects:
| Project Type | Number of Projects |
| Epigenomics | 2 |
BioProject
accession | Organism | Title |
|---|
| PRJNA638631 | Homo sapiens | STAT3 and GR cooperate to drive basal-like triple negative breast cancer gene expression and proliferation (Varley Lab, Department of...) | | PRJNA638632 | Homo sapiens | Reduced representation bisulfite sequencing (RRBS) of breast cancer cell lines (Varley Lab, Department of...) |
|
| Transcriptome or Gene expression | 1 |
BioProject
accession | Organism | Title |
|---|
| PRJNA638630 | Homo sapiens | RNA-seq of DEX induced and ethanol control Basal-like breast cancer cell lines (Varley Lab, Department of...) |
|