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Accession: PRJNA637775 ID: 637775

Round 2 RNA-sequencing analysis of the OsIMA overexpression and knockdown rice lines and Fe deficiency responsiveness of non-transformant (NT) rice. (rice)

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This project is a component of the RNA-sequencing analysis of the OsIMA overexpression and knockdown rice lines and Fe deficiency responsiveness of non-transformant (NT) rice
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1 additional project is a component of the RNA-sequencing analysis of the OsIMA overexpression and knockdown rice lines and Fe deficiency responsiveness of non-transformant (NT) rice.
5826 additional projects are related by organism.
We report the comparison of transcript expression of Fe-sufficient roots of OsIMA overexpression lines IMA1OX-4, IMA2OX-1, OsIMA knockdown lines IMA1i-2, IMA2i-3, and corresponding NT, as well as Fe-deficient roots of NT, by RNA-Seq. More...
AccessionPRJNA637775; GEO: GSE151939
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismOryza sativa[Taxonomy ID: 4530]
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
PublicationsKobayashi T et al., "Iron deficiency-inducible peptide-coding genes OsIMA1 and OsIMA2 positively regulate a major pathway of iron uptake and translocation in rice.", J Exp Bot, 2021 Mar 17;72(6):2196-2211
SubmissionRegistration date: 6-Jun-2020
Research Institute for Bioresources and Biotechnology, Ishikawa Prefectural University
RelevanceAgricultural
Project Data:
Resource NameNumber
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Sequence data
SRA Experiments9
Publications
PubMed1
Other datasets
BioSample9
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes3
SRA Data Details
ParameterValue
Data volume, Gbases2
Data volume, Mbytes1088

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