Four H. scabra integument samples were analysed:
(i) ulcerated integument, individual 1/replicate 1 (1RU)
(ii) ulcerated integument, individual 2/replicate 2 (2RU)
(iii) healthy integument, individual 1/replicate 1 (1RS)
(iv) healthy integument, individual 2/replicate 2 (2RS)
Shotgun metagenome libraries were prepared and sequenced on Illumina NovaSeq 6000 platform (2x150 bp) at Eurofins Genomics (www. More...
Four H. scabra integument samples were analysed:
(i) ulcerated integument, individual 1/replicate 1 (1RU)
(ii) ulcerated integument, individual 2/replicate 2 (2RU)
(iii) healthy integument, individual 1/replicate 1 (1RS)
(iv) healthy integument, individual 2/replicate 2 (2RS)
Shotgun metagenome libraries were prepared and sequenced on Illumina NovaSeq 6000 platform (2x150 bp) at Eurofins Genomics (www.eurofinsgenomics.eu). Raw data were uploaded as FASTQ after demultiplexing of paired-end reads. Quality processing (i.e. dynamic trimming: minimum quality = 15, maximum low-quality basepairs = 5; detection and removal of adapter sequences using Skewer with default parameters 26) and deduplication was performed using MG-RAST 4.0.3 pipeline analysis. Less...