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Accession: PRJNA633740 ID: 633740

Escherichia coli

WGS of Escherichia coli isolated from healthy domestic ruminants in cefotaxime-containing media

See Genome Information for Escherichia coli
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7503 additional projects are related by organism.
As part of a study designed to estimate the prevalence of several food-borne pathogens in healthy domestic ruminant herds (cattle and sheep) in Northern Spain, the genome of 66 isolates of Escherichia coli isolated in cefotaxime-containing media was sequenced using Illumina NovaSeq6000. More...
AccessionPRJNA633740
Data TypeRaw sequence reads
ScopeMonoisolate
OrganismEscherichia coli[Taxonomy ID: 562]
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
PublicationsTello M et al., "Prevalence of Cefotaxime-Resistant Escherichia coli Isolates from Healthy Cattle and Sheep in Northern Spain: Phenotypic and Genome-Based Characterization of Antimicrobial Susceptibility.", Appl Environ Microbiol, 2020 Jul 20;86(15)
Grants
  • "Basque Government (Departamento de Desarrollo Económico e Infraestructuras)" (Grant ID DECO, Basque Government (Departamento de Desarrollo Económico e Infraestructuras))
SubmissionRegistration date: 19-May-2020
NEIKER - Basque Institute for Agricultural Research and Development
RelevanceAgricultural
Locus Tag PrefixHPK27
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments66
Publications
PubMed1
PMC1
Other datasets
BioSample66
SRA Data Details
ParameterValue
Data volume, Gbases171
Data volume, Mbytes54263

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