Metagenome-Assembled Genomes from Amazon river bas... (ID 614052) - BioProject

Display Settings:

Format

Summary
BioProject ID list
Accessions List

Send to:

Choose Destination

File
Clipboard
Collections
My Bibliography

Accession: PRJEB25176 ID: 614052

Metagenome-Assembled Genomes from Amazon river basin

Prokaryotic metagenome-assembled genomes retrieved from Amazon river basin water samples metagenomes sequenced in Illumina platform

Amazon river basin is one of the largest freshwater basins in the world. This ecosystem is poorly understood. More...

Accession	PRJEB25176
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Publications (total 4) Less...	Santos-Júnior CD et al., "Metagenome Sequencing of Prokaryotic Microbiota Collected from Rivers in the Upper Amazon Basin.", Genome Announc, 2017 Jan 12;5(2) More... Santos-Júnior CD et al., "Metagenome Sequencing of Prokaryotic Microbiota Collected from Rivers in the Upper Amazon Basin.", Genome Announc, 2017 Jan 12;5(2) Toyama D et al., "Metagenomics Analysis of Microorganisms in Freshwater Lakes of the Amazon Basin.", Genome Announc, 2016 Dec 22;4(6) Satinsky BM et al., "Metagenomic and metatranscriptomic inventories of the lower Amazon River, May 2011.", Microbiome, 2015 Sep 10;3:39 Satinsky BM et al., "The Amazon continuum dataset: quantitative metagenomic and metatranscriptomic inventories of the Amazon River plume, June 2010.", Microbiome, 2014;2:17 Less...
Submission	Registration date: 23-Mar-2020 Universidade Federal de Sao Carlos - UFSCar

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	9816
WGS master	51
Publications
PubMed	4
PMC	4
Other datasets
BioSample	51
Assembly	51

Assembly details:

Download

Assembly level

Number of Assemblies

Contig

Total

51
51

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_900299105.1	OMIQ00000000	SAMEA104651803	AM_0608	Acinetobacter junii
GCA_900299235.1	OMIZ00000000	SAMEA104651813	AM_0849	Actinomycetota bacterium
GCA_900299285.1	OMJF00000000	SAMEA104651816	AM_0902	Anabaena sp. 54
GCA_900299355.1	OMJR00000000	SAMEA104651829	AM_2104	Anaerolineaceae bacterium
GCA_900299455.1	OMJY00000000	SAMEA104651832	AM_2202	Bacteroidota bacterium
GCA_900299295.1	OMJH00000000	SAMEA104651820	AM_1111	Bacteroidota bacterium
GCA_900299225.1	OMJD00000000	SAMEA104651818	AM_1003	Betaproteobacteria bacterium
GCA_900299145.1	OMIN00000000	SAMEA104651805	AM_0616	Betaproteobacteria bacterium
GCA_900299165.1	OMIT00000000	SAMEA104651808	AM_0630	Burkholderiaceae bacterium
GCA_900299025.1	OMIE00000000	SAMEA104651791	AM_0233	Burkholderiaceae bacterium
GCA_900299425.1	OMJU00000000	SAMEA104651833	AM_2207	Candidatus Rokuibacteriota bacterium
GCA_900299075.1	OMIK00000000	SAMEA104651799	AM_0510	Chlorobi bacterium Chlorobi_1
GCA_900299195.1	OMIX00000000	SAMEA104651806	AM_0619	Deltaproteobacteria bacterium
GCA_900299375.1	OMJN00000000	SAMEA104651827	AM_1801	Euryarchaeota archaeon
GCA_900299465.1	OMJZ00000000	SAMEA104651836	AM_2502	Flavobacteriaceae bacterium
GCA_900299385.1	OMJQ00000000	SAMEA104651831	AM_2124	Flavobacteriaceae bacterium
GCA_900299515.1	OMKG00000000	SAMEA104651834	AM_2208	Flavobacteriaceae bacterium
GCA_900298995.1	OMIC00000000	SAMEA104651789	AM_0226	Hyphomicrobiaceae bacterium
GCA_900299065.1	OMIJ00000000	SAMEA104651796	AM_0275	Hyphomicrobiales bacterium
GCA_900299045.1	OMIH00000000	SAMEA104651793	AM_0244	Methylococcaceae bacterium
GCA_900299115.1	OMIO00000000	SAMEA104651801	AM_0528	Methylocystaceae bacterium
GCA_900299015.1	OMIF00000000	SAMEA104651788	AM_0219	Methylophilaceae bacterium
GCA_900299095.1	OMIL00000000	SAMEA104651798	AM_0507	Methylophilaceae bacterium
GCA_900299125.1	OMIR00000000	SAMEA104651804	AM_0615	Nitrosopumilales archaeon
GCA_900299245.1	OMJA00000000	SAMEA104651819	AM_1104	Nitrospiraceae bacterium
GCA_900299325.1	OMJK00000000	SAMEA104651822	AM_1312	Nitrospiraceae bacterium
GCA_900299365.1	OMJS00000000	SAMEA104651828	AM_1811	Opitutales bacterium
GCA_900299415.1	OMJT00000000	SAMEA104651824	AM_1503	Opitutales bacterium
GCA_900299265.1	OMJC00000000	SAMEA104651809	AM_0643	Oxalobacteraceae bacterium
GCA_900299005.1	OMID00000000	SAMEA104651790	AM_0228	Oxalobacteraceae bacterium
GCA_900299185.1	OMIV00000000	SAMEA104651807	AM_0621	Planctomycetaceae bacterium
GCA_900299085.1	OMIM00000000	SAMEA104651794	AM_0256	Pseudomonadota bacterium
GCA_900299035.1	OMIG00000000	SAMEA104651792	AM_0240	Pseudomonadota bacterium
GCA_900299055.1	OMII00000000	SAMEA104651795	AM_0268	Pseudomonadota bacterium
GCA_900299205.1	OMIW00000000	SAMEA104651810	AM_0729	Pseudomonadota bacterium
GCA_900299445.1	OMJX00000000	SAMEA104651837	AM_2804	Richelia intracellularis HH01
GCA_900299255.1	OMJB00000000	SAMEA104651812	AM_0832	Sphingobacteriales bacterium
GCA_900299495.1	OMKD00000000	SAMEA104651835	AM_2324	Sphingobacteriales bacterium
GCA_900299335.1	OMJL00000000	SAMEA104651825	AM_1603	Sphingomonadaceae bacterium
GCA_900298985.1	OMHY00000000	SAMEA104651787	AM_0118	Streptomycetaceae bacterium
GCA_900299135.1	OMIP00000000	SAMEA104651802	AM_0546	Trueperella pyogenes
GCA_900299315.1	OMJI00000000	SAMEA104651817	AM_0936	Verrucomicrobiota bacterium
GCA_900299175.1	OMIU00000000	SAMEA104651800	AM_0519	Xanthomonas citri pv. aurantifolii
GCA_900299155.1	OMIS00000000	SAMEA104651797	AM_0466	bacterium
GCA_900299275.1	OMJE00000000	SAMEA104651814	AM_0854	bacterium
GCA_900299305.1	OMJJ00000000	SAMEA104651815	AM_0876	bacterium
GCA_900299345.1	OMJM00000000	SAMEA104651826	AM_1606	bacterium
GCA_900299435.1	OMJV00000000	SAMEA104651823	AM_1409	bacterium
GCA_900299405.1	OMJP00000000	SAMEA104651830	AM_2116	bacterium
GCA_900299395.1	OMJO00000000	SAMEA104651821	AM_1205	bacterium
GCA_900299215.1	OMIY00000000	SAMEA104651811	AM_0764	bacterium

BioProject

Result Filters

Display Settings:

Send to:

Metagenome-Assembled Genomes from Amazon river basin

Prokaryotic metagenome-assembled genomes retrieved from Amazon river basin water samples metagenomes sequenced in Illumina platform

Supplemental Content

Related information

Recent activity