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Accession: PRJNA577946 ID: 577946

Xenopus tropicalis strain:Nigerian (tropical clawed frog)

Xenopus tropicalis v10 Genome sequencing and assembly

See Genome Information for Xenopus tropicalis
Xenopus tropicalis v10 genome sequencing and assembly
AccessionPRJNA577946
Data TypeGenome sequencing and assembly
ScopeMonoisolate
OrganismXenopus tropicalis[Taxonomy ID: 8364]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana; Xenopus tropicalis
Publications
  • Hellsten U et al., "The genome of the Western clawed frog Xenopus tropicalis.", Science, 2010 Apr 30;328(5978):633-6
  • Published online: Mitros T et al., "A chromosome-scale genome assembly and dense genetic map for Xenopus tropicalis", Developmental Biology, 2019;452(1):8-20
Grants
  • "Comparative Genetics and Genomics of Xenopus" (Grant ID R01 GM086321, National Institute of General Medical Sciences)
  • "Systematic improvement of Xenopus gene annotations and reference genomes" (Grant ID R01 HD080708, National Institute of Child Health & Human Development)
SubmissionRegistration date: 16-Oct-2019
University of California, Berkeley
RelevanceModel Organism
Locus Tag PrefixXENTR
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)71
WGS master1
SRA Experiments70
Protein Sequences62998
Publications
PubMed1
PMC1
Other datasets
BioSample1
Assembly1
SRA Data Details
ParameterValue
Data volume, Gbases396
Data volume, Tbytes0.59

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