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Accession: PRJNA524703 ID: 524703

Human infant gut virome

This is a study to analyze the dynamic of human gut virome during very early life of the infants.
AccessionPRJNA524703
Data TypeGenome sequencing and assembly
ScopeMultispecies
PublicationsTisza MJ et al., "A catalog of tens of thousands of viruses from human metagenomes reveals hidden associations with chronic diseases.", Proc Natl Acad Sci U S A, 2021 Jun 8;118(23)
SubmissionRegistration date: 27-Feb-2019
UNIVERSITY OF PENNSYLVANIA
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)775
WGS master24
Genomic DNA751
SRA Experiments679
Protein Sequences42667
Publications
PubMed1
PMC1
Other datasets
BioSample276
Assembly24
Assembly details:
Assembly levelNumber of Assemblies
Scaffold Scaffold
Contig Contig
Total
23
1
24
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_009832525.1ScaffoldWVTY00000000SAMN11417979
L4281
Citrobacter koseri
GCA_009832625.1ContigWVTS00000000SAMN11417972
L3891
Enterobacter hormaechei
GCA_009832555.1ScaffoldWVTX00000000SAMN11417978
L4014
Enterobacter hormaechei
GCA_009832355.1ScaffoldWVTR00000000SAMN11417971
L3654
Enterobacter hormaechei
GCA_009832285.1ScaffoldWVTW00000000SAMN11417977
L4010
Enterobacter hormaechei
GCA_009832245.1ScaffoldWVTV00000000SAMN11417976
L3984
Enterobacter hormaechei
GCA_009832255.1ScaffoldWVTU00000000SAMN11417975
L3981
Enterobacter hormaechei
GCA_009832345.1ScaffoldWVTT00000000SAMN11417973
L3894
Enterococcus faecalis
GCA_009832415.1ScaffoldWVTO00000000SAMN11417968
L3451
Enterococcus faecalis
GCA_009832455.1ScaffoldWVTL00000000SAMN11417965
E3894
Enterococcus faecalis
GCA_009832725.1ScaffoldWVTF00000000SAMN11417959
B3451
Enterococcus faecalis
GCA_009832645.1ScaffoldWVTG00000000SAMN11417960
B3751
Enterococcus faecalis
GCA_009832675.1ScaffoldWVTK00000000SAMN11417964
E3854
Enterococcus faecalis
GCA_009832635.1ScaffoldWVTJ00000000SAMN11417963
E3754
Enterococcus faecalis
GCA_009832445.1ScaffoldWVTM00000000SAMN11417966
E3984
Enterococcus faecium
GCA_009832485.1ScaffoldWVTH00000000SAMN11417961
B3754
Enterococcus faecium
GCA_009832495.1ScaffoldWVTI00000000SAMN11417962
E3404
Enterococcus gallinarum
GCA_009832275.1ScaffoldWVUC00000000SAMN11417983
L3951
Escherichia coli
GCA_009832545.1ScaffoldWVTZ00000000SAMN11417980
L3400
Escherichia coli
GCA_009832655.1ScaffoldWVTQ00000000SAMN11417970
L3651
Escherichia coli
GCA_009832375.1ScaffoldWVTN00000000SAMN11417967
L3404
Klebsiella oxytoca
GCA_009832265.1ScaffoldWVUB00000000SAMN11417982
L3754
Klebsiella pneumoniae
GCA_009832535.1ScaffoldWVUA00000000SAMN11417981
L3734
Klebsiella pneumoniae
GCA_009832405.1ScaffoldWVTP00000000SAMN11417969
L3570
Pseudomonas oryzihabitans
SRA Data Details
ParameterValue
Data volume, Gbases555
Data volume, Tbytes0.25

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