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Accession: PRJNA524170 ID: 524170

human gut metagenome

Resistant microbiome underlies antibiotic therapy in pouchitis

Pouchitis developing after total proctocolectomy and ileal pouch anal anastomosis in patients with ulcerative colitis is usually treated with antibiotics. More...
AccessionPRJNA524170
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismhuman gut metagenome[Taxonomy ID: 408170]
unclassified sequences; metagenomes; organismal metagenomes; human gut metagenome
PublicationsDubinsky V et al., "Predominantly Antibiotic-resistant Intestinal Microbiome Persists in Patients With Pouchitis Who Respond to Antibiotic Therapy.", Gastroenterology, 2020 Feb;158(3):610-624.e13
SubmissionRegistration date: 8-Oct-2019
Tel-Aviv University
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)29
SRA Experiments234
Publications
PubMed1
Other datasets
BioSample263
Assembly29
Assembly details:
Assembly levelNumber of Assemblies
Scaffold Scaffold
Total
29
29
AssemblyLevelWGSBioSampleTaxonomy
GCA_008917505.1ScaffoldSKEZ00000000SAMN11008796
human gut metagenome
GCA_008917525.1ScaffoldSKEY00000000SAMN11008797
human gut metagenome
GCA_008932195.1ScaffoldSKET00000000SAMN11008802
human gut metagenome
GCA_008932165.1ScaffoldSKEX00000000SAMN11008798
human gut metagenome
GCA_008932185.1ScaffoldSKEW00000000SAMN11008799
human gut metagenome
GCA_008917205.1ScaffoldSKEV00000000SAMN11008800
human gut metagenome
GCA_008917245.1ScaffoldSKEU00000000SAMN11008801
human gut metagenome
GCA_008917135.1ScaffoldSKEP00000000SAMN11008806
human gut metagenome
GCA_008917165.1ScaffoldSKER00000000SAMN11008804
human gut metagenome
GCA_008917175.1ScaffoldSKES00000000SAMN11008803
human gut metagenome
GCA_008917125.1ScaffoldSKEO00000000SAMN11008807
human gut metagenome
GCA_008917035.1ScaffoldSKEK00000000SAMN11008811
human gut metagenome
GCA_008917105.1ScaffoldSKEQ00000000SAMN11008805
human gut metagenome
GCA_008917045.1ScaffoldSKEL00000000SAMN11008810
human gut metagenome
GCA_008917025.1ScaffoldSKEM00000000SAMN11008809
human gut metagenome
GCA_008917005.1ScaffoldSKEJ00000000SAMN11008812
human gut metagenome
GCA_008917085.1ScaffoldSKEN00000000SAMN11008808
human gut metagenome
GCA_008916985.1ScaffoldSKEI00000000SAMN11008813
human gut metagenome
GCA_008916905.1ScaffoldSKEF00000000SAMN11008816
human gut metagenome
GCA_008917305.1ScaffoldSKFA00000000SAMN11008795
human gut metagenome
GCA_008916925.1ScaffoldSKEH00000000SAMN11008814
human gut metagenome
GCA_008916785.1ScaffoldSKEB00000000SAMN11008820
human gut metagenome
GCA_008916815.1ScaffoldSKDZ00000000SAMN11008822
human gut metagenome
GCA_008916845.1ScaffoldSKEA00000000SAMN11008821
human gut metagenome
GCA_008916805.1ScaffoldSKDY00000000SAMN11008823
human gut metagenome
GCA_008916945.1ScaffoldSKEE00000000SAMN11008817
human gut metagenome
GCA_008916885.1ScaffoldSKED00000000SAMN11008818
human gut metagenome
GCA_008916865.1ScaffoldSKEC00000000SAMN11008819
human gut metagenome
GCA_008916965.1ScaffoldSKEG00000000SAMN11008815
human gut metagenome
SRA Data Details
ParameterValue
Data volume, Gbases232
Data volume, Tbytes0.10

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