Bacteria (ID 523601) - BioProject

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Accession: PRJNA523601 ID: 523601

Bacteria

Bacteria dissemination in different level of health care in South Africa: the effectiveness of infections prevention and control

To investigate hospital environment samples from different public hospital as a source and dissemination of bacterial infection using data to detect problem areas where infection, prevention, and control measures should be instituted with the goal of improving patient safety in Kwazulu- Natal, South Africa by enhancing our understanding of their phylogenies and transmission events, epidemiology, transcriptional factors, clonality, virulence and antibiotic resistance.

Accession	PRJNA523601
Data Type	Genome sequencing and assembly
Scope	Multispecies
Submission	Registration date: 7-May-2019 University of KwaZulu-Natal (UKZN), South Africa
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	980
WGS master	53
SRA Experiments	1
Protein Sequences	3920
Other datasets
BioSample	54
Assembly	53

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

28
25
53

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_017641425.1	SIZF00000000	SAMN10984517	3UPD1	Enterococcus casseliflavus
GCA_017641815.1	SIYO00000000	SAMN10984499	2UPD1	Enterococcus casseliflavus
GCA_017641665.1	SIYS00000000	SAMN10984504	3CPC4	Enterococcus casseliflavus
GCA_017641545.1	SIYZ00000000	SAMN10984511	3MPK3	Enterococcus casseliflavus
GCA_017641515.1	SIZA00000000	SAMN10984512	3MPK4	Enterococcus casseliflavus
GCA_005234035.1	SIYF00000000	SAMN10984490	2SIL2	Enterococcus faecalis
GCA_017641495.1	SIZC00000000	SAMN10984514	3UIC1	Enterococcus faecalis
GCA_017641485.1	SIZD00000000	SAMN10984515	3UIE2	Enterococcus faecalis
GCA_017641465.1	SIZB00000000	SAMN10984513	3UIA2	Enterococcus faecalis
GCA_017641435.1	SIZE00000000	SAMN10984516	3UIJ202	Enterococcus faecalis
GCA_017641625.1	SIYX00000000	SAMN10984509	3MPH1	Enterococcus faecalis
GCA_017641595.1	SIYU00000000	SAMN10984506	3CPH1	Enterococcus faecalis
GCA_017641795.1	SIYN00000000	SAMN10984498	2UPC4	Enterococcus faecalis
GCA_017641785.1	SIYK00000000	SAMN10984495	2UIK3	Enterococcus faecalis
GCA_017641765.1	SIYM00000000	SAMN10984497	2UPA3	Enterococcus faecalis
GCA_017641745.1	SIYP00000000	SAMN10984500	2UPF4	Enterococcus faecalis
GCA_017641695.1	SIYQ00000000	SAMN10984502	2UPJ202	Enterococcus faecalis
GCA_017641395.1	SIZI00000000	SAMN10984520	3UPH1	Enterococcus faecalis
GCA_017641385.1	SIZH00000000	SAMN10984519	3UPF4	Enterococcus faecalis
GCA_017641365.1	SIZG00000000	SAMN10984518	3UPF3	Enterococcus faecalis
GCA_017641565.1	SIYY00000000	SAMN10984510	3MPJ101	Enterococcus faecalis
GCA_017641325.1	SIZJ00000000	SAMN10984521	3UIC2	Enterococcus faecalis
GCA_017642395.1	SIXL00000000	SAMN10984469	1CID1	Enterococcus faecalis
GCA_017642365.1	SIXM00000000	SAMN10984470	1CIH3	Enterococcus faecalis
GCA_017642105.1	SIXX00000000	SAMN10984481	1MPK2	Enterococcus faecalis
GCA_017642085.1	SIXY00000000	SAMN10984482	1MPK3	Enterococcus faecalis
GCA_017642065.1	SIXZ00000000	SAMN10984483	1MPK4	Enterococcus faecalis
GCA_017642045.1	SIYD00000000	SAMN10984487	2MPJ104	Enterococcus faecalis
GCA_017642005.1	SIYC00000000	SAMN10984486	2CPH2	Enterococcus faecalis
GCA_017641985.1	SIYB00000000	SAMN10984485	2CPF3	Enterococcus faecalis
GCA_017641885.1	SIYH00000000	SAMN10984492	2SPL2	Enterococcus faecalis
GCA_017641895.1	SIYG00000000	SAMN10984491	2SPJ101	Enterococcus faecalis
GCA_017641905.1	SIYJ00000000	SAMN10984494	2UIK2	Enterococcus faecalis
GCA_017641865.1	SIYI00000000	SAMN10984493	2UIJ104	Enterococcus faecalis
GCA_017642325.1	SIXK00000000	SAMN10984468	1CIB1	Enterococcus faecalis
GCA_017642305.1	SIXO00000000	SAMN10984472	1CPK3	Enterococcus faecalis
GCA_017642285.1	SIXN00000000	SAMN10984471	1CPK2	Enterococcus faecalis
GCA_017642265.1	SIXQ00000000	SAMN10984474	1MPA3	Enterococcus faecalis
GCA_017642245.1	SIXP00000000	SAMN10984473	1MPA1	Enterococcus faecalis
GCA_017642225.1	SIXR00000000	SAMN10984475	1MPD4	Enterococcus faecalis
GCA_017642205.1	SIXS00000000	SAMN10984476	1MPF1	Enterococcus faecalis
GCA_017642185.1	SIXT00000000	SAMN10984477	1MPF3	Enterococcus faecalis
GCA_017642145.1	SIXU00000000	SAMN10984478	1MPJ101	Enterococcus faecalis
GCA_017642135.1	SIXW00000000	SAMN10984480	1MPJ203	Enterococcus faecium
GCA_017642125.1	SIXV00000000	SAMN10984479	1MPJ201	Enterococcus faecium
GCA_017641685.1	SIYR00000000	SAMN10984503	3CIC1	Enterococcus faecium
GCA_017641725.1	SIYT00000000	SAMN10984505	3CPD4	Enterococcus gallinarum
GCA_017641775.1	SIYL00000000	SAMN10984496	2UPA1	Enterococcus gallinarum
GCA_017641575.1	SIYV00000000	SAMN10984507	3CPL1	Enterococcus gallinarum
GCA_017641605.1	SIYW00000000	SAMN10984508	3CPL4	Enterococcus gallinarum
GCA_017641965.1	SJOK00000000	SAMN10984488	2SIJ201	Enterococcus gallinarum
GCA_017641945.1	SIYE00000000	SAMN10984489	2SIJ202	Enterococcus gallinarum
GCA_017642015.1	SIYA00000000	SAMN10984484	2CIL2	Enterococcus gallinarum

SRA Data Details

Parameter	Value
Data volume, Mbases	458
Data volume, Mbytes	342

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