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Accession: PRJNA522308 ID: 522308

sediment metagenome

Bonneville Salt Flats Sediment Samples

Environmental DNA sequencing of archaeal and bacterial 16S rRNA genes was conducted on samples from multiple evaporite sediment layers of the surface salt crust. More...
AccessionPRJNA522308
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismsediment metagenome[Taxonomy ID: 749907]
unclassified sequences; metagenomes; ecological metagenomes; sediment metagenome
Publications
  • Published online: Mcgonigle J et al., "Robust Archaeal and Bacterial Communities Inhabit Shallow Subsurface Sediments of the Bonneville Salt Flats", mSphere, 2019;4(4)
Grants
  • "CNH-L: Adaptation, Mitigation, and Biophysical Feedbacks in the Changing Bonneville Salt Flats." (Grant ID 1617473, National Science Foundation)
SubmissionRegistration date: 1-Jun-2021
University of Utah
Related Resources
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)28
SRA Experiments49
Other datasets
BioSample51
Assembly28
Assembly details:
Assembly levelNumber of Assemblies
28
28
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_018609605.1ContigJAHEOF000000000SAMN19270139
BinSanityLC-kmean-bin_73-bin_0-refined_4
GCA_018609645.1ContigJAHENX000000000SAMN19270131
BinSanityLC-kmean-bin_44-bin_0-refined_1
GCA_018609835.1ContigJAHEOD000000000SAMN19270137
BinSanityLC-kmean-bin_13-bin_0-refined_3
GCA_018609825.1ContigJAHEOA000000000SAMN19270134
BinSanityLC-kmean-bin_28-bin_0-refined_2
GCA_018609785.1ContigJAHEOE000000000SAMN19270138
BinSanityLC-kmean-bin_24-bin_0-refined_5
GCA_018610025.1ContigJAHENW000000000SAMN19270130
BinSanityLC-kmean-bin_14-bin_0-refined_12
GCA_018610145.1ContigJAHENV000000000SAMN19270129
BinSanityLC-kmean-bin_14-bin_0-refined_6
GCA_018609885.1ContigJAHENY000000000SAMN19270132
BinSanityLC-kmean-bin_57-bin_0-refined_4
GCA_018609925.1ContigJAHEOG000000000SAMN19270140
BinSanityLC-kmean-bin_55-bin_0-refined_6
GCA_018609625.1ContigJAHEOH000000000SAMN19270141
BinSanityLC-kmean-bin_92-bin_0-refined_3
GCA_018609675.1ContigJAHEOC000000000SAMN19270136
BinSanityLC-kmean-bin_44-bin_0-refined_9
GCA_018609735.1ContigJAHENL000000000SAMN19270119
BinSanityLC-kmean-bin_36-bin_0-refined_3
GCA_018609705.1ContigJAHENM000000000SAMN19270120
BinSanityLC-kmean-bin_44-bin_0-refined_5
GCA_018609665.1ContigJAHENN000000000SAMN19270121
BinSanityLC-kmean-bin_53-bin_0-refined_1
GCA_018609945.1ContigJAHENO000000000SAMN19270122
BinSanityLC-kmean-bin_18-bin_0-refined_0
GCA_018610045.1ContigJAHENK000000000SAMN19270118
BinSanityLC-kmean-bin_35-bin_0-refined_4
GCA_018610005.1ContigJAHENJ000000000SAMN19270117
BinSanityLC-kmean-bin_57-bin_0-refined_8
GCA_018609935.1ContigJAHENH000000000SAMN19270115
BinSanityLC-kmean-bin_57-bin_0-refined_5
GCA_018609905.1ContigJAHENI000000000SAMN19270116
BinSanityLC-kmean-bin_45-bin_0-refined_15
GCA_018609965.1ContigJAHENP000000000SAMN19270123
BinSanityLC-kmean-bin_53-bin_0-refined_2
GCA_018610085.1ContigJAHENR000000000SAMN19270125
BinSanityLC-kmean-bin_45-bin_0-refined_10
GCA_018610065.1ContigJAHENQ000000000SAMN19270124
BinSanityLC-kmean-bin_45-bin_0-refined_6
GCA_018610095.1ContigJAHEOB000000000SAMN19270135
BinSanityLC-kmean-bin_24-bin_0-refined_1
GCA_018609805.1ContigJAHENS000000000SAMN19270126
BinSanityLC-kmean-bin_61-bin_0-refined_12
GCA_018609725.1ContigJAHENT000000000SAMN19270127
BinSanityLC-kmean-bin_14-bin_0-refined_8
GCA_018609855.1ContigJAHENU000000000SAMN19270128
BinSanityLC-kmean-bin_57-bin_0-refined_3
GCA_018609755.1ContigJAHENZ000000000SAMN19270133
BinSanityLC-kmean-bin_85-bin_0
GCA_018610125.1ContigJAHEOI000000000SAMN19270142
BinSanityLC-kmean-bin_92-bin_0-refined_6
SRA Data Details
ParameterValue
Data volume, Gbases153
Data volume, Mbytes80553

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