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Genome Information for Mus musculus
The number of known mRNA transcripts in the mouse has been greatly expanded by the RIKEN Mouse Gene Encyclopedia project.
More...The number of known mRNA transcripts in the mouse has been greatly expanded by the RIKEN Mouse Gene Encyclopedia project. Validation of their reproducible expression in a tissue is an important contribution to the study of functional genomics. To assign absolute expression values for mouse transcripts, we applied the E17.5 reference sample to CAGE (cap analysis of gene expression) and expressed sequence tag (EST) high-throughput tag sequencing. We add a reliability index named SRED (Spot Reliability Evaluation Score for DNA microarrays) for each spot. The SRED scores represent the probability that the calibrated gene expression level from a DNA microarray would be less than a factor of 2 different from that of quantitative real-time polymerase chain reaction assays whose dynamic quantification range is treated statistically to be similar to that of the DNA microarray.
Less...| Accession | PRJDB8019 |
| Data Type | Transcriptome or Gene expression |
| Scope | Monoisolate |
| Organism | Mus musculus[Taxonomy ID: 10090] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus; Mus musculus |
| Publications (total 4) Less... | - Matsumura Y et al., "Development of a spot reliability evaluation score for DNA microarrays.", Gene, 2005 May 9;350(2):149-60
More...- Matsumura Y et al., "Development of a spot reliability evaluation score for DNA microarrays.", Gene, 2005 May 9;350(2):149-60
- Kodzius R et al., "Absolute expression values for mouse transcripts: re-annotation of the READ expression database by the use of CAGE and EST sequence tags.", FEBS Lett, 2004 Feb 13;559(1-3):22-6
- Bono H et al., "Systematic expression profiling of the mouse transcriptome using RIKEN cDNA microarrays.", Genome Res, 2003 Jun;13(6B):1318-23
- Miki R et al., "Delineating developmental and metabolic pathways in vivo by expression profiling using the RIKEN set of 18,816 full-length enriched mouse cDNA arrays.", Proc Natl Acad Sci U S A, 2001 Feb 27;98(5):2199-204
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| Submission | Registration date: 12-Feb-2019
Laboratory for Genome Exploration Research Group,Genomic Sciences Center,The Institute of Physical and Chemical Research (RIKEN) |
Project Data:
| Resource Name | Number
of Links |
|---|
| Publications |
| PubMed | 4 |
| PMC | 2 |
No public data is linked to this project. Any recently released data that cites this project will be linked to it within a few days.