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Accession: PRJNA521986 ID: 521986

RNAseq of Wildtype, Smchd1 KO, Dux KO, Double KO, Tet-TKO and quadurple KO ES cells (house mouse)

See Genome Information for Mus musculus
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This project is a component of the The chromosomal protein SMCHD1 regulates DNA methylation by antagonizing TET proteins
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1 additional project is a component of the The chromosomal protein SMCHD1 regulates DNA methylation by antagonizing TET proteins.
47588 additional projects are related by organism.
RNAseq was performed by to compare gene expression between wildtype and Smchd1 KO ES cells, the gene expression pattern in Dux KO mutants , Double KO mutant Tet-TKO mutants and Tet TKO plus SMCKHD1 KO mutants were analyzed by RNAseq. More...
AccessionPRJNA521986; GEO: GSE126467
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismMus musculus[Taxonomy ID: 10090]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus; Mus musculus
PublicationsHuang Z et al., "The chromosomal protein SMCHD1 regulates DNA methylation and the 2c-like state of embryonic stem cells by antagonizing TET proteins.", Sci Adv, 2021 Jan;7(4)
SubmissionRegistration date: 12-Feb-2019
Center for Epigenetics, Van Andel Research Institute
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments24
Publications
PubMed1
PMC1
Other datasets
BioSample24
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes4
SRA Data Details
ParameterValue
Data volume, Gbases107
Data volume, Mbytes41652

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