BioProject

We report the findings from RNA-seq analysis in oxidatively stressed cells, in addition to findings from RNA-seq analysis in cells deleted for cyclin C. More...

We report the findings from RNA-seq analysis in oxidatively stressed cells, in addition to findings from RNA-seq analysis in cells deleted for cyclin C. A total of 20-30% of genes regulated by cyclin C are responsive to oxidative stress. Overall design: Cyclin C-Cdk8 is a conserved kinase that associates with the RNA polymerase II Mediator complex that stimulates or represses transcription depending on the locus. In response to oxidative stress, cyclin C, but not Cdk8, displays partial translocation into the cytoplasm. These findings open the possibility that cyclin C relocalization is a regulatory mechanism governing oxidative stress-induced transcriptional changes. In the present study, the cyclin C-dependent transcriptome was determined and compared to transcriptional changes occurring in oxidatively stressed mouse embryonic fibroblasts. We observed a similar number (~2000) of genes up or downregulated in oxidatively stressed cells. Induced genes include cellular repair/survival factors while repressed loci were generally involved in proliferation or differentiation. Depleting cyclin C in unstressed cells produced an approximately equal number of genes (~2400) that were repressed by, or whose transcription required, cyclin C. Consistent with the possibility that cyclin C nuclear release contributes to transcriptional remodeling in response to oxidative stress, we found that 37% cyclin C-dependent genes were downregulated following stress. Moreover, 20% of cyclin C-repressed genes were induced in response to stress. Less...