See
Genome Information for Homo sapiens
We performed single-cell combinatorial indexing ATAC-seq on the basal-like TNBC cell line HCC1143 under MEK, PI3K, BET and combination treatments as well as DMSO controls
Overall design: Cells were cultured and exposed to inhibitors or vehicle for 72 hours and processed in a single batch of sci-ATAC-seq using transposition barcodes for sample tracking to eliminate batch effects downstream
| Accession | PRJNA521411; GEO: GSE126261 |
| Data Type | Transcriptome or Gene expression |
| Scope | Monoisolate |
| Organism | Homo sapiens[Taxonomy ID: 9606] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens |
| Publications | Risom T et al., "Differentiation-state plasticity is a targetable resistance mechanism in basal-like breast cancer.", Nat Commun, 2018 Sep 19;9(1):3815 |
| Submission | Registration date: 7-Feb-2019
Adey Lab, MMG, Oregon Health & Science University |
| Relevance | Medical |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 1 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 1 |
| GEO DataSets | 1 |