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2 additional projects are components of the Constitutively bound CTCF sites maintain 3D chromatin architecture and long-range epigenetically regulated domains.
This study aimed to ascertain the effect of CTCF RNAi on gene expression, chromatin conformation and the chromatin environment in prostate cancer cell line, LNCaP
Overall design: We performed Hi-C-seq following 144hrs of Non-Target or CTCF RNAi in LNCaP cells.
| Accession | PRJNA518744; GEO: GSE125640 |
| Scope | Multiisolate |
| Organism | Homo sapiens[Taxonomy ID: 9606] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens |
| Publications | Khoury A et al., "Constitutively bound CTCF sites maintain 3D chromatin architecture and long-range epigenetically regulated domains.", Nat Commun, 2020 Jan 7;11(1):54 |
| Submission | Registration date: 25-Jan-2019
Garvan Institute |
| Relevance | Medical |
Project Data:
| Resource Name | Number
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| Sequence data |
| SRA Experiments | 6 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 6 |
| GEO DataSets | 1 |