See
Genome Information for Escherichia coli
First, Escherichia coli cells were grown to late exponential phase (O.D.600 = 0.76) in modified M63 medium. Then, low molecular weight RNAs (<200 nt) were isolated from the cultured cells using mirVana miRNA Isolation Kit (Ambion). cDNA library was built from the RNA sample ligated with both 5' and 3' end specific RNA adapters for determining direction of each transcript. The cDNA library was deep sequenced by Illumina/Solexa 1G Genome Analyzer system.
| Accession | PRJDA51849 |
| Data Type | Transcriptome or Gene expression |
| Scope | Monoisolate |
| Organism | Escherichia coli K-12[Taxonomy ID: 83333] Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; Escherichia coli K-12 |
| Publications | Shinhara A et al., "Deep sequencing reveals as-yet-undiscovered small RNAs in Escherichia coli.", BMC Genomics, 2011 Aug 24;12:428 |
| Submission | Registration date: 1-Sep-2010
Keio University |
| Locus Tag Prefix | EK3 |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 1 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 1 |